arXiv Open Access 2007

Polymer Translocation out of Planar Confinements

Debabrata Panja Gerard T. Barkema Robin C. Ball
Lihat Sumber

Abstrak

Polymer translocation in three dimensions out of planar confinements is studied in this paper. Three membranes are located at $z=-h$, $z=0$ and $z=h_1$. These membranes are impenetrable, except for the middle one at $z=0$, which has a narrow pore. A polymer with length $N$ is initially sandwiched between the membranes placed at $z=-h$ and $z=0$ and translocates through this pore. We consider strong confinement (small $h$), where the polymer is essentially reduced to a two-dimensional polymer, with a radius of gyration scaling as $R^{\tinytext{(2D)}}_g \sim N^{ν_{\tinytext{2D}}}$; here, $ν_{\tinytext{2D}}=0.75$ is the Flory exponent in two dimensions. The polymer performs Rouse dynamics. Based on theoretical analysis and high-precision simulation data, we show that in the unbiased case $h=h_1$, the dwell-time $τ_d$ scales as $N^{2+ν_{\tinytext{2D}}}$, in perfect agreement with our previously published theoretical framework. For $h_1=\infty$, the situation is equivalent to field-driven translocation in two dimensions. We show that in this case $τ_d$ scales as $N^{2ν_{\tinytext{2D}}}$, in agreement with several existing numerical results in the literature. This result violates the earlier reported lower bound $N^{1+ν}$ for $τ_d$ for field-driven translocation. We argue, based on energy conservation, that the actual lower bound for $τ_d$ is $N^{2ν}$ and not $N^{1+ν}$. Polymer translocation in such theoretically motivated geometries thus resolves some of the most fundamental issues that are the subjects of much heated debate in recent times.

Penulis (3)

D

Debabrata Panja

G

Gerard T. Barkema

R

Robin C. Ball

Format Sitasi

Panja, D., Barkema, G.T., Ball, R.C. (2007). Polymer Translocation out of Planar Confinements. https://arxiv.org/abs/0710.0147

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Tahun Terbit
2007
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en
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arXiv
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Open Access ✓