Hasil untuk "Neurology. Diseases of the nervous system"

Sterre de Jonge, Elisabeth J. Vinke, Meike W. Vernooij et al.

Disease progression modeling provides a robust framework to identify long-term disease trajectories from short-term biomarker data. It is a valuable tool to gain a deeper understanding of diseases with a long disease trajectory, such as Alzheimer's disease. A key limitation of most disease progression models is that they are specific to a single data type (e.g., continuous data), thereby limiting their applicability to heterogeneous, real-world datasets. To address this limitation, we propose the Mixed Events model, a novel disease progression model that handles both discrete and continuous data types. This model is implemented within the Subtype and Stage Inference (SuStaIn) framework, resulting in Mixed-SuStaIn, enabling subtype and progression modeling. We demonstrate the effectiveness of Mixed-SuStaIn through simulation experiments and real-world data from the Alzheimer's Disease Neuroimaging Initiative, showing that it performs well on mixed datasets. The code is available at: https://github.com/ucl-pond/pySuStaIn.

Pierluigi Colli, Jürgen Sprekels

In this paper, we study an optimal control problem for a viscous Cahn--Hilliard system with zero Neumann boundary conditions in which a hyperbolic relaxation term involving the second time derivative of the chemical potential has been added to the first equation of the system. For the initial-boundary value problem of this system, results concerning well-posedness, continuous dependence and regularity are known. We show Fréchet differentiability of the associated control-to-state operator, study the associated adjoint state system, and derive first-order necessary optimality conditions. Concerning the nonlinearities driving the system, we can include the case of logarithmic potentials. In addition, we perform an asymptotic analysis of the optimal control problem as the relaxation coefficient approaches zero.

Xiang Liu, Zhaoxiang Liu, Huan Hu et al.

While conversational generative AI has shown considerable potential in enhancing decision-making for agricultural professionals, its exploration has predominantly been anchored in text-based interactions. The evolution of multimodal conversational AI, leveraging vast amounts of image-text data from diverse sources, marks a significant stride forward. However, the application of such advanced vision-language models in the agricultural domain, particularly for crop disease diagnosis, remains underexplored. In this work, we present the crop disease domain multimodal (CDDM) dataset, a pioneering resource designed to advance the field of agricultural research through the application of multimodal learning techniques. The dataset comprises 137,000 images of various crop diseases, accompanied by 1 million question-answer pairs that span a broad spectrum of agricultural knowledge, from disease identification to management practices. By integrating visual and textual data, CDDM facilitates the development of sophisticated question-answering systems capable of providing precise, useful advice to farmers and agricultural professionals. We demonstrate the utility of the dataset by finetuning state-of-the-art multimodal models, showcasing significant improvements in crop disease diagnosis. Specifically, we employed a novel finetuning strategy that utilizes low-rank adaptation (LoRA) to finetune the visual encoder, adapter and language model simultaneously. Our contributions include not only the dataset but also a finetuning strategy and a benchmark to stimulate further research in agricultural technology, aiming to bridge the gap between advanced AI techniques and practical agricultural applications. The dataset is available at https: //github.com/UnicomAI/UnicomBenchmark/tree/main/CDDMBench.

Elliot M. Miller, Tat Chung D. Chan, Carlos Montes-Matamoros et al.

Many neurodegenerative diseases (NDs) are characterized by the slow spatial spread of toxic protein species in the brain. The toxic proteins can induce neuronal stress, triggering the Unfolded Protein Response (UPR), which slows or stops protein translation and can indirectly reduce the toxic load. However, the UPR may also trigger processes leading to apoptotic cell death and the UPR is implicated in the progression of several NDs. In this paper, we develop a novel mathematical model to describe the spatiotemporal dynamics of the UPR mechanism for prion diseases. Our model is centered around a single neuron, with representative proteins P (healthy) and S (toxic) interacting with heterodimer dynamics (S interacts with P to form two S's). The model takes the form of a coupled system of nonlinear reaction-diffusion equations with a delayed, nonlinear flux for P (delay from the UPR). Through the delay, we find parameter regimes that exhibit oscillations in the P- and S-protein levels. We find that oscillations are more pronounced when the S-clearance rate and S-diffusivity are small in comparison to the P-clearance rate and P-diffusivity, respectively. The oscillations become more pronounced as delays in initiating the UPR increase. We also consider quasi-realistic clinical parameters to understand how possible drug therapies can alter the course of a prion disease. We find that decreasing the production of P, decreasing the recruitment rate, increasing the diffusivity of S, increasing the UPR S-threshold, and increasing the S clearance rate appear to be the most powerful modifications to reduce the mean UPR intensity and potentially moderate the disease progression.

Xihan Qin, Li Liao

Comorbidity carries significant implications for disease understanding and management. The genetic causes for comorbidity often trace back to mutations occurred either in the same gene associated with two diseases or in different genes associated with different diseases respectively but coming into connection via protein-protein interactions. Therefore, human interactome has been used in more sophisticated study of disease comorbidity. Human interactome, as a large incomplete graph, presents its own challenges to extracting useful features for comorbidity prediction. In this work, we introduce a novel approach named Biologically Supervised Graph Embedding (BSE) to allow for selecting most relevant features to enhance the prediction accuracy of comorbid disease pairs. Our investigation into BSE's impact on both centered and uncentered embedding methods showcases its consistent superiority over the state-of-the-art techniques and its adeptness in selecting dimensions enriched with vital biological insights, thereby improving prediction performance significantly, up to 50% when measured by ROC for some variations. Further analysis indicates that BSE consistently and substantially improves the ratio of disease associations to gene connectivity, affirming its potential in uncovering latent biological factors affecting comorbidity. The statistically significant enhancements across diverse metrics underscore BSE's potential to introduce novel avenues for precise disease comorbidity predictions and other potential applications. The GitHub repository containing the source code can be accessed at the following link: https://github.com/xihan-qin/Biologically-Supervised-Graph-Embedding.

Mengwei Wang, Ruixin Yan, Zeyi Hou et al.

In the field of medical image analysis, the scarcity of Chinese chest X-ray report datasets has hindered the development of technology for generating Chinese chest X-ray reports. On one hand, the construction of a Chinese chest X-ray report dataset is limited by the time-consuming and costly process of accurate expert disease annotation. On the other hand, a single natural language generation metric is commonly used to evaluate the similarity between generated and ground-truth reports, while the clinical accuracy and effectiveness of the generated reports rely on an accurate disease labeler (classifier). To address the issues, this study proposes a disease labeler tailored for the generation of Chinese chest X-ray reports. This labeler leverages a dual BERT architecture to handle diagnostic reports and clinical information separately and constructs a hierarchical label learning algorithm based on the affiliation between diseases and body parts to enhance text classification performance. Utilizing this disease labeler, a Chinese chest X-ray report dataset comprising 51,262 report samples was established. Finally, experiments and analyses were conducted on a subset of expert-annotated Chinese chest X-ray reports, validating the effectiveness of the proposed disease labeler.

Nikhil J. Dhinagar, Conor Owens-Walton, Emily Laltoo et al.

There is great interest in developing radiological classifiers for diagnosis, staging, and predictive modeling in progressive diseases such as Parkinson's disease (PD), a neurodegenerative disease that is difficult to detect in its early stages. Here we leverage severity-based meta-data on the stages of disease to define a curriculum for training a deep convolutional neural network (CNN). Typically, deep learning networks are trained by randomly selecting samples in each mini-batch. By contrast, curriculum learning is a training strategy that aims to boost classifier performance by starting with examples that are easier to classify. Here we define a curriculum to progressively increase the difficulty of the training data corresponding to the Hoehn and Yahr (H&Y) staging system for PD (total N=1,012; 653 PD patients, 359 controls; age range: 20.0-84.9 years). Even with our multi-task setting using pre-trained CNNs and transfer learning, PD classification based on T1-weighted (T1-w) MRI was challenging (ROC AUC: 0.59-0.65), but curriculum training boosted performance (by 3.9%) compared to our baseline model. Future work with multimodal imaging may further boost performance.

S M Atikur Rahman, Sifat Ibtisum, Ehsan Bazgir et al.

The global need for effective disease diagnosis remains substantial, given the complexities of various disease mechanisms and diverse patient symptoms. To tackle these challenges, researchers, physicians, and patients are turning to machine learning (ML), an artificial intelligence (AI) discipline, to develop solutions. By leveraging sophisticated ML and AI methods, healthcare stakeholders gain enhanced diagnostic and treatment capabilities. However, there is a scarcity of research focused on ML algorithms for enhancing the accuracy and computational efficiency. This research investigates the capacity of machine learning algorithms to improve the transmission of heart rate data in time series healthcare metrics, concentrating particularly on optimizing accuracy and efficiency. By exploring various ML algorithms used in healthcare applications, the review presents the latest trends and approaches in ML-based disease diagnosis (MLBDD). The factors under consideration include the algorithm utilized, the types of diseases targeted, the data types employed, the applications, and the evaluation metrics. This review aims to shed light on the prospects of ML in healthcare, particularly in disease diagnosis. By analyzing the current literature, the study provides insights into state-of-the-art methodologies and their performance metrics.

Mrinmoy Roy, Anica Tasnim Protity

Almost 80 million Americans suffer from hair loss due to aging, stress, medication, or genetic makeup. Hair and scalp-related diseases often go unnoticed in the beginning. Sometimes, a patient cannot differentiate between hair loss and regular hair fall. Diagnosing hair-related diseases is time-consuming as it requires professional dermatologists to perform visual and medical tests. Because of that, the overall diagnosis gets delayed, which worsens the severity of the illness. Due to the image-processing ability, neural network-based applications are used in various sectors, especially healthcare and health informatics, to predict deadly diseases like cancers and tumors. These applications assist clinicians and patients and provide an initial insight into early-stage symptoms. In this study, we used a deep learning approach that successfully predicts three main types of hair loss and scalp-related diseases: alopecia, psoriasis, and folliculitis. However, limited study in this area, unavailability of a proper dataset, and degree of variety among the images scattered over the internet made the task challenging. 150 images were obtained from various sources and then preprocessed by denoising, image equalization, enhancement, and data balancing, thereby minimizing the error rate. After feeding the processed data into the 2D convolutional neural network (CNN) model, we obtained overall training accuracy of 96.2%, with a validation accuracy of 91.1%. The precision and recall score of alopecia, psoriasis, and folliculitis are 0.895, 0.846, and 1.0, respectively. We also created a dataset of the scalp images for future prospective researchers.

Hong-Ming Yin, Jun Zou

In this paper we study a nonlinear reaction-diffusion system which models an infectious disease caused by bacteria such as those for cholera. One of the significant features in this model is that a certain portion of the recovered human hosts may lose a lifetime immunity and could be infected again. Another important feature in the model is that the mobility for each species is allowed to be dependent upon both the location and time. With the whole population assumed to be susceptible with the bacteria, the model is a strongly coupled nonlinear reaction-diffusion system. We prove that the nonlinear system has a unique solution globally in any space dimension under some natural conditions on the model parameters and the given data. Moreover, the long-time behavior and stability analysis for the solutions are carried out rigorously. In particular, we characterize the precise conditions on variable parameters about the stability or instability of all steady-state solutions. These new results provide the answers to several open questions raised in the literature.

G. Vicente, A. Adin, T. Goicoa et al.

Despite the amount of research on disease mapping in recent years, the use of multivariate models for areal spatial data remains limited due to difficulties in implementation and computational burden. These problems are exacerbated when the number of small areas is very large. In this paper, we introduce an order-free multivariate scalable Bayesian modelling approach to smooth mortality (or incidence) risks of several diseases simultaneously. The proposal partitions the spatial domain into smaller subregions, fits multivariate models in each subdivision and obtains the posterior distribution of the relative risks across the entire spatial domain. The approach also provides posterior correlations among the spatial patterns of the diseases in each partition that are combined through a consensus Monte Carlo algorithm to obtain correlations for the whole study region. We implement the proposal using integrated nested Laplace approximations (INLA) in the R package bigDM and use it to jointly analyse colorectal, lung, and stomach cancer mortality data in Spanish municipalities. The new proposal permits the analysis of big data sets and provides better results than fitting a single multivariate model.

Anusua Trivedi, Jocelyn Desbiens, Ron Gross et al.

Purpose: To demonstrate that retinal microvasculature per se is a reliable biomarker for Diabetic Retinopathy (DR) and, by extension, cardiovascular diseases. Methods: Deep Learning Convolutional Neural Networks (CNN) applied to color fundus images for semantic segmentation of the blood vessels and severity classification on both vascular and full images. Vessel reconstruction through harmonic descriptors is also used as a smoothing and de-noising tool. The mathematical background of the theory is also outlined. Results: For diabetic patients, at least 93.8% of DR No-Refer vs. Refer classification can be related to vasculature defects. As for the Non-Sight Threatening vs. Sight Threatening case, the ratio is as high as 96.7%. Conclusion: In the case of DR, most of the disease biomarkers are related topologically to the vasculature. Translational Relevance: Experiments conducted on eye blood vasculature reconstruction as a biomarker shows a strong correlation between vasculature shape and later stages of DR.

Kelvin Kwakye, Emmanuel Dadzie

Coronary heart disease, which is a form of cardiovascular disease (CVD), is the leading cause of death worldwide. The odds of survival are good if it is found or diagnosed early. The current report discusses a comparative approach to the classification of coronary heart disease datasets using machine learning (ML) algorithms. The current study created and tested several machine-learning-based classification models. The dataset was subjected to Smote to handle unbalanced classes and feature selection technique in order to assess the impact on two distinct performance metrics. The results show that logistic regression produced the highest performance score on the original dataset compared to the other algorithms employed. In conclusion, this study suggests that LR on a well-processed and standardized dataset can predict coronary heart disease with greater accuracy than the other algorithms.

Pedro Gajardo, Victor Riquelme, Diego Vicencio

In this paper, we study an optimal control problem of a communicable disease in a prison population. In order to control the spread of the disease inside a prison, we consider an active case-finding strategy, consisting on screening a proportion of new inmates at the entry point, followed by a treatment depending on the results of this procedure. The control variable consists then in the coverage of the screening applied to new inmates. The disease dynamics is modeled by a SIS (susceptible-infected-susceptible) model, typically used to represent diseases that do not confer immunity after infection. We determine the optimal strategy that minimizes a combination between the cost of the screening/treatment at the entrance and the cost of maintaining infected individuals inside the prison, in a given time horizon. Using the Pontryagin Maximum Principle and Hamilton-Jacobi-Bellman equation, among other tools, we provide the complete synthesis of an optimal feedback control, consisting in a bang-bang strategy with at most two switching times and no singular arc trajectory, characterizing different profiles depending on model parameters.

Zaid Tahir, Waleed Tahir, Saad Ali Liaqat

In this paper, a linear mathematical model for a quad copter unmanned aerial vehicle (UAV) is derived. The three degrees of freedom (3DOF) and six degrees of freedom (6DOF) quad copter state-space models are developed starting from basic Newtonian equations. These state space models are very important to control the quad copter system which is inherently dynamically unstable.

Danielle J. Harper, Marco Augustin, Antonia Lichtenegger et al.

Recent Alzheimer's disease (AD) patient studies have focused on retinal analysis, as the retina is the only part of the central nervous system which can be imaged non-invasively by optical methods. However as this is a relatively new approach, the occurrence and role of pathological features such as retinal layer thinning, extracellular amyloid beta (A$β$) accumulation and vascular changes is still debated. Animal models of AD are therefore often used in attempts to understand the disease. In this work, both eyes of 24 APP/PS1 transgenic mice (age: 45-104 weeks) and 15 age-matched wildtype littermates were imaged by a custom-built multi-contrast optical coherence tomography (OCT) system. The system provided a combination of standard reflectivity data, polarization-sensitive data and OCT angiograms. This tri-fold contrast provided qualitative and quantitative information on retinal layer thickness and structure, presence of hyper-reflective foci, phase retardation abnormalities and retinal vasculature. While abnormal structural properties and phase retardation signals were observed in the retinas, the observations were very similar in transgenic and control mice. At the end of the experiment, retinas and brains were harvested from a subset of the mice (14 transgenic, 7 age-matched control) in order to compare the in vivo results to histological analysis, and to quantify the cortical A$β$ plaque load.

Chowdhury Rafeed Rahman, Preetom Saha Arko, Mohammed Eunus Ali et al.

An accurate and timely detection of diseases and pests in rice plants can help farmers in applying timely treatment on the plants and thereby can reduce the economic losses substantially. Recent developments in deep learning based convolutional neural networks (CNN) have greatly improved the image classification accuracy. Being motivated by the success of CNNs in image classification, deep learning based approaches have been developed in this paper for detecting diseases and pests from rice plant images. The contribution of this paper is two fold: (i) State-of-the-art large scale architectures such as VGG16 and InceptionV3 have been adopted and fine tuned for detecting and recognizing rice diseases and pests. Experimental results show the effectiveness of these models with real datasets. (ii) Since large scale architectures are not suitable for mobile devices, a two-stage small CNN architecture has been proposed, and compared with the state-of-the-art memory efficient CNN architectures such as MobileNet, NasNet Mobile and SqueezeNet. Experimental results show that the proposed architecture can achieve the desired accuracy of 93.3\% with a significantly reduced model size (e.g., 99\% less size compared to that of VGG16).

Jean-Pierre Tchapet Njafa, Serge Guy Nana Engo

This paper presents the QAMDiagnos, a model of Quantum Associative Memory (QAM) that can be a helpful tool for medical staff without experience or laboratory facilities, for the diagnosis of four tropical diseases (malaria, typhoid fever, yellow fever and dengue) which have several similar signs and symptoms. The memory can distinguish a single infection from a polyinfection. Our model is a combination of the improved versions of the original linear quantum retrieving algorithm proposed by Ventura and the non-linear quantum search algorithm of Abrams and Lloyd. From the given simulation results, it appears that the efficiency of recognition is good when particular signs and symptoms of a disease are inserted given that the linear algorithm is the main algorithm. The non-linear algorithm helps confirm or correct the diagnosis or give some advice to the medical staff for the treatment. So, our QAMDiagnos that has a friendly graphical user interface for desktop and smart-phone is a sensitive and a low-cost diagnostic tool that enables rapid and accurate diagnosis of four tropical diseases.

Samuel V. Scarpino, Antoine Allard, Laurent Hebert-Dufresne

Infectious diseases often spread faster near their peak than would be predicted given early data on transmission. Despite the commonality of this phenomena, there are no known general mechanisms able to cause an exponentially spreading dis- ease to begin spreading faster. Indeed most features of real world social networks, e.g. clustering1,2 and community structure3, and of human behaviour, e.g. social distancing4 and increased hygiene5, will slow disease spread. Here, we consider a model where individuals with essential societal roles-e.g. teachers, first responders, health-care workers, etc.- who fall ill are replaced with healthy individuals. We refer to this process as relational exchange. Relational exchange is also a behavioural process, but one whose effect on disease transmission is less obvious. By incorporating this behaviour into a dynamic network model, we demonstrate that replacing individuals can accelerate disease transmission. Furthermore, we find that the effects of this process are trivial when considering a standard mass-action model, but dramatic when considering network structure. This result highlights another critical shortcoming in mass-action models, namely their inability to account for behavioural processes. Lastly, using empirical data, we find that this mechanism parsimoniously explains observed patterns across more than seventeen years of influenza and dengue virus data. We anticipate that our findings will advance the emerging field of disease forecasting and will better inform public health decision making during outbreaks.

Lora Billings, Luis Mier-y-Teran-Romero, Brandon Lindley et al.

Disease control is of paramount importance in public health with infectious disease extinction as the ultimate goal. Although diseases may go extinct due to random loss of effective contacts where the infection is transmitted to new susceptible individuals, the time to extinction in the absence of control may be prohibitively long. Thus intervention controls, such as vaccination of susceptible individuals and/or treatment of infectives, are typically based on a deterministic schedule, such as periodically vaccinating susceptible children based on school calendars. In reality, however, such policies are administered as a random process, while still possessing a mean period. Here, we consider the effect of randomly distributed intervention as disease control on large finite populations. We show explicitly how intervention control, based on mean period and treatment fraction, modulates the average extinction times as a function of population size and rate of infection spread. In particular, our results show an exponential improvement in extinction times even though the controls are implemented using a random Poisson distribution. Finally, we discover those parameter regimes where random treatment yields an exponential improvement in extinction times over the application of strictly periodic intervention. The implication of our results is discussed in light of the availability of limited resources for control.