Generative Artificial Intelligence (GenAI) rapidly transforms software engineering, yet existing research remains fragmented across individual tasks in the Software Development Lifecycle. This study integrates a systematic literature review with a survey of 65 software developers. The results show that GenAI exerts its highest impact in design, implementation, testing, and documentation, where over 70 % of developers report at least halving the time for boilerplate and documentation tasks. 79 % of survey respondents use GenAI daily, preferring browser-based Large Language Models over alternatives integrated directly in their development environment. Governance is maturing, with two-thirds of organizations maintaining formal or informal guidelines. In contrast, early SDLC phases such as planning and requirements analysis show markedly lower reported benefits. In a nutshell, GenAI shifts value creation from routine coding toward specification quality, architectural reasoning, and oversight, while risks such as uncritical adoption, skill erosion, and technical debt require robust governance and human-in-the-loop mechanisms.
Nathan Wolfrath, Simrin Patel, Madelyn Flitcroft
et al.
Generative artificial intelligence (AI) tools are becoming increasingly used for writing tasks. However, the extent of their use in peer-reviewed medical literature remains unclear. We conducted a longitudinal analysis of all Original Investigations, Research Letters, and Invited Commentaries published in JAMA Network Open from January 2022 through March 2025. The main body text of 7,251 articles was analyzed using a commercial AI-detection tool (Originality.AI) to estimate the probability that manuscripts contained a significant amount of AI-generated content. Articles were analyzed aggregated by month, publication type, and domain. Overall, 195 articles (2.7%) were classified as containing significant AI-generated text. The monthly proportion increased from 0.0% in January 2022 to 11.3% in March 2025, with a significant upward trend over time (P<0.001). Invited Commentaries had the highest proportion of detected AI-generated content (6.7%), followed by Original Investigations (2.2%) and Research Letters (1.4%). There was also significant variation across publication domain (P=0.04). Only 15 articles (0.2%) disclosed large language model use, of which 40.0% were classified as containing AI-generated text. While findings suggest increasing detectable AI-generated content in medical literature, limitations of current detection tools necessitates cautious interpretation.
Context: Jupyter Notebook has emerged as a versatile tool that transforms how researchers, developers, and data scientists conduct and communicate their work. As the adoption of Jupyter notebooks continues to rise, so does the interest from the software engineering research community in improving the software engineering practices for Jupyter notebooks. Objective: The purpose of this study is to analyze trends, gaps, and methodologies used in software engineering research on Jupyter notebooks. Method: We selected 146 relevant publications from the DBLP Computer Science Bibliography up to the end of 2024, following established systematic literature review guidelines. We explored publication trends, categorized them based on software engineering topics, and reported findings based on those topics. Results: The most popular venues for publishing software engineering research on Jupyter notebooks are related to human-computer interaction instead of traditional software engineering venues. Researchers have addressed a wide range of software engineering topics on notebooks, such as code reuse, readability, and execution environment. Although reusability is one of the research topics for Jupyter notebooks, only 64 of the 146 studies can be reused based on their provided URLs. Additionally, most replication packages are not hosted on permanent repositories for long-term availability and adherence to open science principles. Conclusion: Solutions specific to notebooks for software engineering issues, including testing, refactoring, and documentation, are underexplored. Future research opportunities exist in automatic testing frameworks, refactoring clones between notebooks, and generating group documentation for coherent code cells.
Motivation: An adjuvant is a chemical incorporated into vaccines that enhances their efficacy by improving the immune response. Identifying adjuvant names from cancer vaccine studies is essential for furthering research and enhancing immunotherapies. However, the manual curation from the constantly expanding biomedical literature poses significant challenges. This study explores the automated recognition of vaccine adjuvant names using Large Language Models (LLMs), specifically Generative Pretrained Transformers (GPT) and Large Language Model Meta AI (Llama). Methods: We utilized two datasets: 97 clinical trial records from AdjuvareDB and 290 abstracts annotated with the Vaccine Adjuvant Compendium (VAC). GPT-4o and Llama 3.2 were employed in zero-shot and few-shot learning paradigms with up to four examples per prompt. Prompts explicitly targeted adjuvant names, testing the impact of contextual information such as substances or interventions. Outputs underwent automated and manual validation for accuracy and consistency. Results: GPT-4o attained 100% Precision across all situations while exhibiting notable improve in Recall and F1-scores, particularly with incorporating interventions. On the VAC dataset, GPT-4o achieved a maximum F1-score of 77.32% with interventions, surpassing Llama-3.2-3B by approximately 2%. On the AdjuvareDB dataset, GPT-4o reached an F1-score of 81.67% for three-shot prompting with interventions, surpassing Llama-3.2-3 B's maximum F1-score of 65.62%. Conclusion: Our findings demonstrate that LLMs excel at identifying adjuvant names, including rare variations of naming representation. This study emphasizes the capability of LLMs to enhance cancer vaccine development by efficiently extracting insights. Future work aims to broaden the framework to encompass various biomedical literature and enhance model generalizability across various vaccines and adjuvants.
Sam Adriaensen, Jan De Beule, Jozefien D'haeseleer
et al.
DISCLAIMER: Due to an error in the literature, we cannot be sure that the conclusions drawn in this paper are correct. The goal of this note is to connect some interesting results in the literature on algebraic graph theory and finite geometry. In 1999, Weng gave an almost complete classification of classical distance-regular graphs of negative type with diameter at least 4. He proved that these graphs are either dual polar graphs of Hermitian polar spaces, Hermitian forms graphs, or fall into a last category. It was recently proved by Yian et al. that the latter category does not exist when the diameter equals 3, which by Weng's results proves that they do not exist for bigger diameter. Using a result of Vanhove, this proves that certain hemisystems in Hermitian polar spaces cannot exist.
LLM-powered multimodal systems are increasingly used to interpret human behavior, yet how researchers apply the models' 'social competence' remains poorly understood. This paper presents a systematic literature review of 176 publications across different application domains (e.g., healthcare, education, and entertainment). Using a four-dimensional coding framework (application, technical, evaluative, and ethical), we find (1) frequent use of pattern recognition and information extraction from multimodal sources, but limited support for adaptive, interactive reasoning; (2) a dominant 'modality-to-text' pipeline that privileges language over rich audiovisual cues, striping away nuanced social cues; (3) evaluation practices reliant on static benchmarks, with socially grounded, human-centered assessments rare; and (4) Ethical discussions focused mainly on legal and rights-related risks (e.g., privacy), leaving societal risks (e.g., deception) overlooked--or at best acknowledged but left unaddressed. We outline a research agenda for evaluating socially competent, ethically informed, and interaction-aware multi-modal systems.
Newman Chen, Frédérique Mélanie-Becquet, Jean Barré
et al.
Character recognition is a technique that enables the automated extraction of characters from texts, while coreference resolution establishes connections between various mentions of the same character, collectively facilitating the creation of expansive character networks (Moretti, 2011). Together, these technologies make it possible to navigate and analyze large literary corpora, opening new avenues for in-depth exploration and understanding of literature. We have created a system specifically for the French language, based on BookNLP-fr (the French counterpart of BookNLP) and NetworkX (a Python package for the manipulation and visualization of complex networks). This allows us to establish connections between series of literary works based on structural features (such as typical relationships between characters) or specific subgenres (for instance, adventure novels featuring a group of young heroes). In this paper, as an illustration, we show the networks obtained at different stages of the short novel Boule de Suif from Maupassant (a French 19th century novelist). These figures effectively illustrate how the relationships between the characters develop over the course of the story.
Several computational tools have been developed to detect and identify sexism, misogyny, and gender-based hate speech, particularly on online platforms. These tools draw on insights from both social science and computer science. Given the increasing concern over gender-based discrimination in digital spaces, the contested definitions and measurements of sexism, and the rise of interdisciplinary efforts to understand its online manifestations, a systematic literature review is essential for capturing the current state and trajectory of this evolving field. In this review, we make four key contributions: (1) we synthesize the literature into five core themes: definitions of sexism and misogyny, disciplinary divergences, automated detection methods, associated challenges, and design-based interventions; (2) we adopt an interdisciplinary lens, bridging theoretical and methodological divides across disciplines; (3) we highlight critical gaps, including the need for intersectional approaches, the under-representation of non-Western languages and perspectives, and the limited focus on proactive design strategies beyond text classification; and (4) we offer a methodological contribution by applying a rigorous semi-automated systematic review process guided by PRISMA, establishing a replicable standard for future work in this domain. Our findings reveal a clear disciplinary divide in how sexism and misogyny are conceptualized and measured. Through an evidence-based synthesis, we examine how existing studies have attempted to bridge this gap through interdisciplinary collaboration. Drawing on both social science theories and computational modeling practices, we assess the strengths and limitations of current methodologies. Finally, we outline key challenges and future directions for advancing research on the detection and mitigation of online sexism and misogyny.
Due to technological development, Augmented Reality (AR) can be applied in different domains. However, innovative technologies refer to new interaction paradigms, thus creating a new experience for the user. This so-called User Experience (UX) is essential for developing and designing interactive products. Moreover, UX must be measured to get insights into the user's perception and, thus, to improve innovative technologies. We conducted a Systematic Literature Review (SLR) to provide an overview of the current research concerning UX evaluation of AR. In particular, we aim to identify (1) research referring to UX evaluation of AR and (2) articles containing AR-specific UX models or frameworks concerning the theoretical foundation. The SLR is a five-step approach including five scopes. From a total of 498 records based on eight search terms referring to two databases, 30 relevant articles were identified and further analyzed. Results show that most approaches concerning UX evaluation of AR are quantitative. In summary, five UX models/frameworks were identified. Concerning the UX evaluation results of AR in Training and Education, the UX was consistently positive. Negative aspects refer to errors and deficiencies concerning the AR system and its functionality. No specific metric for UX evaluation of AR in the field of Training and Education exists. Only three AR-specific standardized UX questionnaires could be found. However, the questionnaires do not refer to the field of Training and Education. Thus, there is a lack of research in the field of UX evaluation of AR in Training and Education.
This work concerns studies of field electron emission (FE) from large area emitters. It discusses--and where possible corrects--several literature weaknesses related to the analysis of experimental current-voltage data and related emitter characterization, using a recent paper in Applied Surface Science to exemplify these weaknesses. One weakness, not detected in the published paper, is that current-density experiments and related theoretical predictions there differ by a large factor, in this case of order 10^(16). The work also shows that a recently introduced validity test--the "magic emitter" test--can be used, at the immediate-pre-submission or review stages, to help uncover scientific problems. More generally, in the literature of FE from large area emitters over the last 15 years or so, there appear to be many papers (perhaps hundreds of papers) with some or all of the weaknesses discussed. The scientific integrity of this research area, and of the related peer review processes, appear to be significantly broken, and attempts to correct the situation by the normal processes of science have had limited effect. There seems a growing case for independent wider investigation into research integrity issues of this general kind, and possibly for later action by Governments.
Context: Machine learning (ML) is nowadays so pervasive and diffused that virtually no application can avoid its use. Nonetheless, its enormous potential is often tempered by the need to manage non-functional requirements and navigate pressing, contrasting trade-offs. Objective: In this respect, we notice the lack of a comprehensive synthesis of the non-functional requirements affecting ML-enabled systems, other than the major challenges faced to deal with them. Such a synthesis may not only provide a comprehensive summary of the state of the art, but also drive further research on the analysis, management, and optimization of non-functional requirements of ML-intensive systems. Method: In this paper, we propose a systematic literature review targeting two key aspects such as (1) the classification of the non-functional requirements investigated so far, and (2) the challenges to be faced when developing models in ML-enabled systems. Through the combination of well-established guidelines for conducting systematic literature reviews and additional search criteria, we survey a total amount of 69 research articles. Results: Our findings report that current research identified 30 different non-functional requirements, which can be grouped into six main classes. We also compiled a catalog of more than 23 software engineering challenges, based on which further research should consider the nonfunctional requirements of machine learning-enabled systems. Conclusion: We conclude our work by distilling implications and a future outlook on the topic.
Martin Brenner, Napoleon H. Reyes, Teo Susnjak
et al.
In the last decade, the computer vision field has seen significant progress in multimodal data fusion and learning, where multiple sensors, including depth, infrared, and visual, are used to capture the environment across diverse spectral ranges. Despite these advancements, there has been no systematic and comprehensive evaluation of fusing RGB-D and thermal modalities to date. While autonomous driving using LiDAR, radar, RGB, and other sensors has garnered substantial research interest, along with the fusion of RGB and depth modalities, the integration of thermal cameras and, specifically, the fusion of RGB-D and thermal data, has received comparatively less attention. This might be partly due to the limited number of publicly available datasets for such applications. This paper provides a comprehensive review of both, state-of-the-art and traditional methods used in fusing RGB-D and thermal camera data for various applications, such as site inspection, human tracking, fault detection, and others. The reviewed literature has been categorised into technical areas, such as 3D reconstruction, segmentation, object detection, available datasets, and other related topics. Following a brief introduction and an overview of the methodology, the study delves into calibration and registration techniques, then examines thermal visualisation and 3D reconstruction, before discussing the application of classic feature-based techniques as well as modern deep learning approaches. The paper concludes with a discourse on current limitations and potential future research directions. It is hoped that this survey will serve as a valuable reference for researchers looking to familiarise themselves with the latest advancements and contribute to the RGB-DT research field.
Tanjin He, Haoyan Huo, Christopher J. Bartel
et al.
Synthesis prediction is a key accelerator for the rapid design of advanced materials. However, determining synthesis variables such as the choice of precursor materials is challenging for inorganic materials because the sequence of reactions during heating is not well understood. In this work, we use a knowledge base of 29,900 solid-state synthesis recipes, text-mined from the scientific literature, to automatically learn which precursors to recommend for the synthesis of a novel target material. The data-driven approach learns chemical similarity of materials and refers the synthesis of a new target to precedent synthesis procedures of similar materials, mimicking human synthesis design. When proposing five precursor sets for each of 2,654 unseen test target materials, the recommendation strategy achieves a success rate of at least 82%. Our approach captures decades of heuristic synthesis data in a mathematical form, making it accessible for use in recommendation engines and autonomous laboratories.
The Gromov-Wasserstein (GW) framework adapts ideas from optimal transport to allow for the comparison of probability distributions defined on different metric spaces. Scalable computation of GW distances and associated matchings on graphs and point clouds have recently been made possible by state-of-the-art algorithms such as S-GWL and MREC. Each of these algorithmic breakthroughs relies on decomposing the underlying spaces into parts and performing matchings on these parts, adding recursion as needed. While very successful in practice, theoretical guarantees on such methods are limited. Inspired by recent advances in the theory of quantization for metric measure spaces, we define Quantized Gromov Wasserstein (qGW): a metric that treats parts as fundamental objects and fits into a hierarchy of theoretical upper bounds for the GW problem. This formulation motivates a new algorithm for approximating optimal GW matchings which yields algorithmic speedups and reductions in memory complexity. Consequently, we are able to go beyond outperforming state-of-the-art and apply GW matching at scales that are an order of magnitude larger than in the existing literature, including datasets containing over 1M points.
The development of a materials synthesis route is usually based on heuristics and experience. A possible new approach would be to apply data-driven approaches to learn the patterns of synthesis from past experience and use them to predict the syntheses of novel materials. However, this route is impeded by the lack of a large-scale database of synthesis formulations. In this work, we applied advanced machine learning and natural language processing techniques to construct a dataset of 35,675 solution-based synthesis "recipes" extracted from the scientific literature. Each recipe contains essential synthesis information including the precursors and target materials, their quantities, and the synthesis actions and corresponding attributes. Every recipe is also augmented with the reaction formula. Through this work, we are making freely available the first large dataset of solution-based inorganic materials synthesis recipes.
José Pereira dos Reis, Fernando Brito e Abreu, Glauco de Figueiredo Carneiro
et al.
Context: Code smells (CS) tend to compromise software quality and also demand more effort by developers to maintain and evolve the application throughout its life-cycle. They have long been catalogued with corresponding mitigating solutions called refactoring operations. Objective: This SLR has a twofold goal: the first is to identify the main code smells detection techniques and tools discussed in the literature, and the second is to analyze to which extent visual techniques have been applied to support the former. Method: Over 83 primary studies indexed in major scientific repositories were identified by our search string in this SLR. Then, following existing best practices for secondary studies, we applied inclusion/exclusion criteria to select the most relevant works, extract their features and classify them. Results: We found that the most commonly used approaches to code smells detection are search-based (30.1%), and metric-based (24.1%). Most of the studies (83.1%) use open-source software, with the Java language occupying the first position (77.1%). In terms of code smells, God Class (51.8%), Feature Envy (33.7%), and Long Method (26.5%) are the most covered ones. Machine learning techniques are used in 35% of the studies. Around 80% of the studies only detect code smells, without providing visualization techniques. In visualization-based approaches several methods are used, such as: city metaphors, 3D visualization techniques. Conclusions: We confirm that the detection of CS is a non trivial task, and there is still a lot of work to be done in terms of: reducing the subjectivity associated with the definition and detection of CS; increasing the diversity of detected CS and of supported programming languages; constructing and sharing oracles and datasets to facilitate the replication of CS detection and visualization techniques validation experiments.
Martin Forsberg Lie, Mary Sánchez-Gordón, Ricardo Colomo-Palacios
Background: Medical device development projects must follow proper directives and regulations to be able to market and sell the end-product in their respective territories. The regulations describe requirements that seem to be opposite to efficient software development and short time-to-market. As agile approaches, like DevOps, are becoming more and more popular in software industry, a discrepancy between these modern methods and traditional regulated development has been reported. Although examples of successful adoption in this context exist, the research is sparse. Aims: The objective of this study is twofold: to review the current state of DevOps adoption in regulated medical device environment; and to propose a checklist based on that review for introducing DevOps in that context. Method: A multivocal literature review is performed and evidence is synthesized from sources published between 2015 to March of 2020 to capture the opinions of experts and community in this field. Results: Our findings reveal that adoption of DevOps in a regulated medical device environment such as ISO 13485 has its challenges, but potential benefits may outweigh those in areas such as regulatory, compliance, security, organizational and technical. Conclusion: DevOps for regulated medical device environments is a highly appealing approach as compared to traditional methods and could be particularly suited for regulated medical development. However, an organization must properly anchor a transition to DevOps in top-level management and be supportive in the initial phase utilizing professional coaching and space for iterative learning; as such an initiative is a complex organizational and technical task.
Phishing is a well-known cybersecurity attack that has rapidly increased in recent years. It poses legitimate risks to businesses, government agencies, and all users due to sensitive data breaches, subsequent financial and productivity losses, and social and personal inconvenience. Often, these attacks use social engineering techniques to deceive end-users, indicating the importance of user-focused studies to help prevent future attacks. We provide a detailed overview of phishing research that has focused on users by conducting a systematic literature review of peer-reviewed academic papers published in ACM Digital Library. Although published work on phishing appears in this data set as early as 2004, we found that of the total number of papers on phishing (N = 367) only 13.9% (n = 51) focus on users by employing user study methodologies such as interviews, surveys, and in-lab studies. Even within this small subset of papers, we note a striking lack of attention to reporting important information about methods and participants (e.g., the number and nature of participants), along with crucial recruitment biases in some of the research.