The human vaginal microbiome is dominated by bacteria from the genus Lactobacillus, which create an acidic environment thought to protect women against sexually transmitted pathogens and opportunistic infections. Strikingly, lactobacilli dominance appears to be unique to humans; while the relative abundance of lactobacilli in the human vagina is typically >70%, in other mammals lactobacilli rarely comprise more than 1% of vaginal microbiota. Several hypotheses have been proposed to explain humans' unique vaginal microbiota, including humans' distinct reproductive physiology, high risk of STDs, and high risk of microbial complications linked to pregnancy and birth. Here, we test these hypotheses using comparative data on vaginal pH and the relative abundance of lactobacilli in 26 mammalian species and 50 studies (N = 21 mammals for pH and 14 mammals for lactobacilli relative abundance). We found that non-human mammals, like humans, exhibit the lowest vaginal pH during the period of highest estrogen. However, the vaginal pH of non-human mammals is never as low as is typical for humans (median vaginal pH in humans = 4.5; range of pH across all 21 non-human mammals = 5.4–7.8). Contrary to disease and obstetric risk hypotheses, we found no significant relationship between vaginal pH or lactobacilli relative abundance and multiple metrics of STD or birth injury risk (P-values ranged from 0.13 to 0.99). Given the lack of evidence for these hypotheses, we discuss two alternative explanations: the common function hypothesis and a novel hypothesis related to the diet of agricultural humans. Specifically, with regard to diet we propose that high levels of starch in human diets have led to increased levels of glycogen in the vaginal tract, which, in turn, promotes the proliferation of lactobacilli. If true, human diet may have paved the way for a novel, protective microbiome in human vaginal tracts. Overall, our results highlight the need for continuing research on non-human vaginal microbial communities and the importance of investigating both the physiological mechanisms and the broad evolutionary processes underlying human lactobacilli dominance.
Jose M. Folgueiras, Lucas G. Chej, Luis L. Zurdo
et al.
Phase-sensitive optical coherence tomography (PhS-OCT) enables precise, contactless measurements of temperature-dependent changes in transparent solids. In this work, we used a common-path spectral-domain OCT system to measure optical path differences (OPD) in a 1-mm-thick soda-lime glass slide immersed in a thermal bath. The OPD variation showed a strong linear correlation with temperature in the range of 20-52°C, with an experimentally determined sensitivity of 12.4 +- 1.9 nm/°C. A theoretical model incorporating the thermo-optic and thermal expansion coefficients of glass was proposed to interpret the measurements, and numerical simulations based on finite volume methods were performed to account for spatial temperature gradients in the system. The simulations showed agreement with experimental results within 5% error, validating the approach. Additionally, repeatability tests using lateral scans at constant temperature demonstrated sub-10 nm stability, supporting future extensions to spatially resolved thermal mapping. This technique provides a low-cost platform for localized temperature sensing in solid transparent materials.
Exosomes are cup-shaped small (30–150 nm) extracellular vesicles with the structure of lipid bilayer membrane (Tkach and Thery, 2016) containing proteins, mRNAs and microRNAs that mediate intercellular communication (Valadi et al., 2007). Unlike other extracellular vesicles, exosomes are released into the extracellular space when the multivesicular bodies (MVBs) fuse with the plasma membrane (Colombo et al., 2014). Almost all cell types can secret exosomes and exosomes exist in diverse biological fluids, such as blood, urine, saliva, hydrothorax and breast milk (Thery et al., 2006). Up to now, a number of studies have demonstrated the functions of exosomes in disease development and the potential clinical applications in diagnosis and therapy (Shao et al., 2016). To conduct reproducible studies on exosomal content and function, storage conditions need to have minimal impact on exosomes. There have been a few studies providing partial confirmation of the effect of different storage conditions on exosomes currently. Using exosomes from urine (Zhou et al., 2006) and conditioned medium (Lee et al., 2016) respectively to investigate the influence of storage temperature on exosomes as measured by Western blot, both groups have concluded that storage below −70 °C for a long time is the best temperature for the recovery of exosomes. On the other hand, Sokolova et al. (2011) applied nanoparticle tracking analysis (NTA) to measure the size changes of exosomes at different temperatures, revealing that storage at 37 °C led to more reduction in exosome sizes than that at 4 °C. However, in this study no information about changes in the particle concentration was reported. Some other studies revealed the effect of pH, storage temperature and cycles of freezing and thawing only on the yield of exosome isolation, but not on quantity changes during storage (Akers et al., 2016; Ban et al., 2015; Zhao et al., 2017). Therefore, the standard criterion of exosomal preservation condition is still undefined. Herein, we used HEK 293T cells and ExtraPEG method (Rider et al., 2016) to investigate the influence of multiple storage conditions (temperature, cycles of freezing and thawing, pH) on the quantity changes and cellular uptake of exosomes. ExtraPEG is a new polyethylene glycol (PEG) precipitation method for the purification exosomes without affecting their biological activity. Generally, ultracentrifugation (UC) (Mincheva-Nilsson et al., 2016) is most reliable but time-consuming; and precipitation methods such as ExoQuick (patent number: US20130337440 A1) and ExtraPEG can obtain higher yields of exosomes but with impurity of coprecipitated proteins. First, exosomes from the conditioned medium were extracted by ExtraPEG or UC method. After isolation, transmission electron microscope (TEM), NTA and Western blot were performed to analyze exosomes. Exosomes extracted by UC or ExtraPEG were similar in cupshaped structure (Fig. S1A and S1B), size distribution (Fig. S1C and S1D). And as representative exosome biomarkers, ALG-2-interacting protein X (ALIX), heat shock protein 70 (HSP70) and tumor susceptibility gene 101 (TSG101) were detected in exosomal protein while β-tubulin, widely used as an internal reference to analyze intracellular protein levels, was not detected in exosome samples (Fig. S1E and S1F). These data indicated exosomes were successfully isolated by ExtraPEG method and suitable for the following experiments. After isolation, the exosome pellets were divided equally into several portions and each portion was stored at different temperatures (−80 °C, −20 °C, 4 °C, 37 °C and 60 °C), or through 1–5 cycles of freezing to −80 °C and thawing, or at different pH levels (pH 4, pH 7 and pH 10). After 24 h, NTA and Western blot were performed to measure the remaining quantity of exosomes. Regarding temperatures, the exosomes stored at 4 °C had the highest concentration (Fig. 1A). Consistent with the NTA results, the exosomes stored at 4 °C showed higher levels of representative exosome markers ALIX, HSP70 and TSG101 (Fig. 1B). With the increasing cycles of freezing and thawing, the exosomal concentration and protein levels of ALIX, HSP70 and TSG101 all decreased (Fig. 1D and 1E). For different pH levels, the loss of exosomal concentration and three exosome markers ALIX, HSP70 and TSG101 at pH 4 and pH 10 was more than that at pH 7 (Fig. 1E and 1F). Interestingly, exosomes stored at pH 4 decreased more sharply than that at pH 10 (Fig. 1F and 1G), suggesting that acidic
The radiometric integral is the fundamental radiance--to--flux relation in imaging, whereas étendue is typically used as a compact system-level descriptor. For quantitative imaging and calibration, however, the operative mapping must be explicit at the level of individual detector pixels, including pixel acceptance and field-dependent pupil visibility. This work packages the pixel-restricted radiometric integral into a reusable geometric throughput factor by defining a per-pixel optogeometric (optical-throughput) factor $F_{\mathrm{opg},i}$ (units \si{m^2.sr}) such that, under weak radiance variation, $Φ_i \approx L_i\,F_{\mathrm{opg},i}$. Making throughput explicit at the pixel scale yields an optics-delivered photon budget in which the incident photon count at the detector, $N_{\mathrm{inc},i}$ (before quantum efficiency), scales linearly with geometry: $N_{\mathrm{inc},i}\propto F_{\mathrm{opg},i}$ for a given scene radiance distribution and fixed acquisition settings (bandwidth, integration time, and optical transmission). The corresponding optics-delivered (pre-detection) shot-noise ceiling is set by the incident photon count $N_{\mathrm{inc},i}$, with $\mathrm{SNR}_{\mathrm{inc},i}\le \sqrt{N_{\mathrm{inc},i}}\propto \sqrt{F_{\mathrm{opg},i}}$, while in photoelectron units one has $\mathrm{SNR}_i \le \sqrt{N_{\mathrm{ph},i}}=\sqrt{η(\barν)\,N_{\mathrm{inc},i}}\propto \sqrt{F_{\mathrm{opg},i}}$, where $N_{\mathrm{ph},i}$ is the detected photoelectron count and $η(\barν)$ is the (narrowband) quantum efficiency; additional detector/electronics noise sources (e.g.\ dark current and read noise) can only reduce the achieved SNR below these shot-noise limits.
Vivekananda Bal, Jacqueline M. Wolfrum, Paul W. Barone
et al.
Crystallization of biological molecules has high potential to solve some challenges in drug manufacturing. Thus, understanding the process is critical to efficiently adapting crystallization to biopharmaceutical manufacturing. This article describes phase behavior for the solution crystallization of recombinant adeno-associated virus (rAAV) capsids of serotypes 5, 8, and 9 as model biological macromolecular assemblies. Hanging-drop vapor diffusion experiments are used to determine the combined effects of pH and polyethylene glycol (PEG) and sodium chloride concentrations in which full and empty capsids nucleate and grow. Full and empty capsids show different crystallization behavior although they possess similar capsid structure and similar outer morphology with icosahedral symmetry and 2-fold, 3-fold, and 5-fold symmetry. The differential charge environment surrounding full and empty capsids is found to influence capsid crystallization. The crystal growth rate is found to be affected by the mass of the macromolecular assembly rather than the structure/shape of the macromolecular assembly. The regions of precipitant concentrations and pH in which crystallization occurs are found to be different for different rAAV serotypes and for full and empty capsids for each serotype. Depending on the precipitant concentrations and the rAAV serotype, a variety of complex crystal morphologies are formed and a variety of non-crystallization outcomes such as unidentified dense solid-phase/opaque crystals and an oil/dense phase is observed. The well-defined dense phase/oil is found to be converted into a solid phase over a long period of time. Trends in the crystallization of full and empty capsids between serotypes is observed to be altered by the extent of post-translational modifications (PTMS) associated with the massive macromolecular proteinaceous assembly.
Erfan Salahinejad, Avaneesh Muralidharan, Forough Azam Sayahpour
et al.
Addressing a critical challenge in current tissue-engineering practices, this study aims to enhance vascularization in 3D porous scaffolds by incorporating bioceramics laden with pro-angiogenic ions. Specifically, freeze-dried gelatin-based scaffolds were infused with sol-gel-derived powders of Cu-doped akermanite (Ca2MgSi2O7) and bredigite (Ca7MgSi4O16) at various concentrations (10, 20, and 30 wt%). The scaffolds were initially characterized for their structural integrity, biodegradability, swelling behavior, impact on physiological pH, and cytocompatibility with human umbilical vein endothelial cells (HUVECs). The silicate incorporation effectiveness in promoting vascularity was then assessed through HUVEC attachment, capillary tube formation, and ex-ovo chick embryo chorioallantoic membrane assays. The findings revealed significant improvements in both in-vitro and ex-ovo vascularity of the gelatin scaffolds upon the addition of Cu-doped akermanite. The most effective concentrations were determined to be 10 and 20%, which led to notable HUVEC metabolic activity, a well-spread morphology with extensive peripheral filopodia and lamellipodia at 10% and a cobblestone phenotype indicative of in-vivo endothelium at 20% during cell attachment, the formation of complex networks of tubular structures, and robust vascularization in chick embryo development. Moving forward, the incorporation of Cu-doped akermanite into tissue-engineering scaffolds shows great potential for addressing the limitations of vascularization, especially for critical-sized bone defects, by facilitating the controlled release of pro-angiogenic and pro-osteogenic ions.
We perform first-principles electron-phonon interaction (EPI) calculations based on many-body perturbation theory to study the temperature-dependent band-gap and charge-carrier transport properties for Mg$_{2}$Si and Ca$_{2}$Si using the Boltzmann transport equation (BTE) under different relaxation-time approximations (RTAs). For a PBE band gap of 0.21 (0.56) eV in Mg$_{2}$Si (Ca$_{2}$Si), a zero-point renormalization correction of 29-33 (37-51) meV is obtained using various approaches, while the gap at 300 K is 0.15-0.154 (0.46-0.5) eV. The electron mobility ($μ_{e}$), with a detailed convergence study at 300 K, is evaluated using linearized (self-energy and momentum RTA, or SERTA and MRTA) and iterative BTE (IBTE) solutions. At 300 K, the $μ_{e}$ values are 351 (100), 573 (197), and 524 (163) cm$^{2}V^{-1}s^{-1}$ from SERTA, MRTA, and IBTE, respectively, for Mg$_{2}$Si (Ca$_{2}$Si). SERTA (MRTA) provides results in better agreement with IBTE at higher (lower) temperatures, while SERTA-derived $μ_{e}$ closely matches experimental $μ_{e}$ values for Mg$_{2}$Si. Thermoelectric (TE) transport coefficients significantly influenced by the choice of RTA, with SERTA and MRTA yielding improved agreement with experimental results compared to constant RTA (CRTA) for Mg$_{2}$Si over an electron concentration range of $10^{17}$ to $10^{20}$ cm$^{-3}$. The lattice thermal conductivity ($κ_{ph}$) at 300 K due to phonon-phonon interactions is estimated to be 22.7 (7.2) W m$^{-1}K^{-1}$ for Mg$_{2}$Si (Ca$_{2}$Si). The highest calculated figure of merit (zT) under CRTA is 0.35 (0.38), which decreases to 0.08 (0.085) when EPI is included using MRTA. This study clearly identifies the critical role of EPI in accurate transport predictions of TE silicides. Finally, we explore strategies to enhance zT by reducing $κ_{ph}$ through nanostructuring and mass-difference scattering.
Compositionally engineered metal-organic frameworks (MOFs) have been designed and used to fabricate ultrafast scintillating films with emission in both the UV and visible regions. The inclusion of hafnium (Hf) ions in the nodes of the MOF increases the interaction cross-section with ionizing radiation, partially compensating for the low density of the porous material and dramatically increasing the system scintillation yield. The high diffusivity of bimolecular excitons within the framed conjugated ligands allows bimolecular annihilation processes between excited states that partially quench the MOF luminescence, resulting in ultrafast scintillation pulses under X-ray excitation with kinetics in the hundreds of picoseconds time scale. Despite the quenching, the gain in scintillation yield achieved by incorporating Hf ions is large enough to maintain the light yield of the films above 104 ph/MeV under soft X-rays. These unprecedented high efficiencies and simultaneous ultrafast emission kinetics obtained at room temperature in a technologically attractive solid-state configuration, together with the versatility of its composition allowing for further application-specific modifications, place the MOF platform in a prominent position for the realization of the next generation of ultrafast scintillation counters for high-energy physics studies and medical imaging applications.
Maryam Mohammadi, Stefanie L. Stoll, Analía F. Herrero
et al.
Silver phenylselenide (AgSePh), known as mithrene, is a two-dimensional (2D) organic-inorganic chalcogenide (MOC) semiconductor with a wide direct band gap, narrow blue emission and in-plane anisotropy. However, its application in next-generation optoelectronics is limited by crystal size and orientation, as well as challenges in large-area growth. Here, we introduce a controlled tarnishing step on the silver surface prior to the solid-vapor-phase chemical transformation into AgSePh thin films. Mithrene thin films were prepared through thermally assisted conversion (TAC) at 100°C, incorporating a pre-tarnishing water (H${_2}$O) vapor pulse and propylamine (PrNH${_2}$) as a coordinating ligand to modulate Ag${^+}$ ion reactivity and facilitate the conversion of Ph${_2}$Se${_2}$ into an active intermediate. The AgSePh thin films were characterized by X-ray diffraction (XRD), scanning electron microscopy (SEM), and grazing incidence wide-angle X-ray scattering (GIWAXS). The pre-tarnishing process, combined with organic ligands, resulted in large crystals exceeding 1 $μ$m and improved homogeneous in-plane orientation, while also enabling the selective, wafer-scale synthesis of mithrene on 100 mm wafers. Furthermore, the films were integrated on planar graphene field-effect phototransistors (GFETs) and demonstrated photoresponsivity beyond 100 A/W at 450 nm, highlighting mithrene's potential for blue light-detection applications.
AbstractThe chemical and physical properties of protonated polyaniline (PANI)‐based films, including PANI‐emeraldine salt (ES) and PANI/polyvinyl acetate (PVAc) films, before and after pH treatments are characterized and compared. Protonated PANI‐based films are prepared by spin coating. The effects of pH value and immersion time on the film properties are investigated to gain a better understanding of their performance in pH sensing. The films are characterized based on color, morphology, chemical structure, phase state, and protonation state. Protonated PANI‐based films exhibit a color change from green to dark blue as deprotonation occurs in solutions with higher pH. The highly porous structure of PANI/PVAc films is slightly affected by the pH of the solution. However, the globular structure of the PANI‐ES films forms cracks with increasing immersion time. PANI/PVAc films exhibit better stability in acidic and neutral solutions than in alkaline solutions because of the hydrolysis of PVAc. Compared with the negligible differences in the PANI/PVAc film in buffers with different pH, PANI‐ES exhibits noticeable changes. Therefore, PVAc improves the stability and performance of PANI for pH‐sensing applications.
Monoculture of rice seedlings or Azolla pinnata was challenged with different aluminum stress conditions, and both species showed significantly reduced total biomass, chlorophyll, root, and leaf length. Mixed cultures showed no stress phenotypes and notably enhanced growth parameters under low and moderate aluminum stress (10 and 30 μM). Discretely, Azolla plants failed to survive when grown at >30 μM aluminum treatment (pH 4.75) but sustained well when grown with rice plants. Importantly, both species accumulated less aluminum and more root exudates in mixed cultures of Azolla and rice plants. Furthermore, expression of Sensitive To Proton rhizotoxicity1 (ApSTOP1 and OsART1) in both species declined significantly in mixed cultures than in monocultures. Ammonium transporter 1 (ApAMT1 and OsAMT1.1) expressed significantly more in heterogeneous cultures, indicating that ammonium transport is unaffected. Our observations conclude that aluminum accumulation and stress effects significantly decreased in heterogeneous cultures when compared with homogenous cultures.