Larissa Ferreira Rodrigues Moreira, Rodrigo Moreira, Leonardo Gabriel Ferreira Rodrigues
Coffee yields are contingent on the timely and accurate diagnosis of diseases; however, assessing leaf diseases in the field presents significant challenges. Although Artificial Intelligence (AI) vision models achieve high accuracy, their adoption is hindered by the limitations of constrained devices and intermittent connectivity. This study aims to facilitate sustainable on-device diagnosis through knowledge distillation: high-capacity Convolutional Neural Networks (CNNs) trained in data centers transfer knowledge to compact CNNs through Ensemble Learning (EL). Furthermore, dense tiny pairs were integrated through simple and optimized ensembling to enhance accuracy while adhering to strict computational and energy constraints. On a curated coffee leaf dataset, distilled tiny ensembles achieved competitive with prior work with significantly reduced energy consumption and carbon footprint. This indicates that lightweight models, when properly distilled and ensembled, can provide practical diagnostic solutions for Internet of Things (IoT) applications.
Dimitri Breda, Muhammad Tanveer, Jianhong Wu
et al.
Predicting the human burden of vector-borne diseases from limited surveillance data remains a major challenge, particularly in the presence of nonlinear transmission dynamics and delayed effects arising from vector ecology and human behavior. We develop a data-driven framework based on an extension of Sparse Identification of Nonlinear Dynamics (SINDy) to systems with distributed memory, enabling discovery of transmission mechanisms directly from time series data. Using severe fever with thrombocytopenia syndrome (SFTS) as a case study, we show that this approach can uncover key features of tick-borne disease dynamics using only human incidence and local temperature data, without imposing predefined assumptions on human case reporting. We further demonstrate that predictive performance is substantially enhanced when the data-driven model is coupled with mechanistic representations of tick-host transmission pathways informed by empirical studies. The framework supports systematic sensitivity analysis of memory kernels and behavioral parameters, identifying those most influential for prediction accuracy. Although the approach prioritizes predictive accuracy over mechanistic transparency, it yields sparse, interpretable integral representations suitable for epidemiological forecasting. This hybrid methodology provides a scalable strategy for forecasting vector-borne disease risk and informing public health decision-making under data limitations.
Rupsa Rani Mishra, D. Chandrasekhar Rao, Ajaya Kumar Tripathy
Manual observation and monitoring of individual cows for disease detection present significant challenges in large-scale farming operations, as the process is labor-intensive, time-consuming, and prone to reduced accuracy. The reliance on human observation often leads to delays in identifying symptoms, as the sheer number of animals can hinder timely attention to each cow. Consequently, the accuracy and precision of disease detection are significantly compromised, potentially affecting animal health and overall farm productivity. Furthermore, organizing and managing human resources for the manual observation and monitoring of cow health is a complex and economically demanding task. It necessitates the involvement of skilled personnel, thereby contributing to elevated farm maintenance costs and operational inefficiencies. Therefore, the development of an automated, low-cost, and reliable smart system is essential to address these challenges effectively. Although several studies have been conducted in this domain, very few have simultaneously considered the detection of multiple common diseases with high prediction accuracy. However, advancements in Internet of Things (IoT), Machine Learning (ML), and Cyber-Physical Systems have enabled the automation of cow health monitoring with enhanced accuracy and reduced operational costs. This study proposes an IoT-enabled Cyber-Physical System framework designed to monitor the daily activities and health status of cow. A novel ML algorithm is proposed for the diagnosis of common cow diseases using collected physiological and behavioral data. The algorithm is designed to predict multiple diseases by analyzing a comprehensive set of recorded physiological and behavioral features, enabling accurate and efficient health assessment.
Clemens Watzenböck, Daniel Aletaha, Michaël Deman
et al.
Quantitative disease severity scoring in medical imaging is costly, time-consuming, and subject to inter-reader variability. At the same time, clinical archives contain far more longitudinal imaging data than expert-annotated severity scores. Existing self-supervised methods typically ignore this chronological structure. We introduce ChronoCon, a contrastive learning approach that replaces label-based ranking losses with rankings derived solely from the visitation order of a patient's longitudinal scans. Under the clinically plausible assumption of monotonic progression in irreversible diseases, the method learns disease-relevant representations without using any expert labels. This generalizes the idea of Rank-N-Contrast from label distances to temporal ordering. Evaluated on rheumatoid arthritis radiographs for severity assessment, the learned representations substantially improve label efficiency. In low-label settings, ChronoCon significantly outperforms a fully supervised baseline initialized from ImageNet weights. In a few-shot learning experiment, fine-tuning ChronoCon on expert scores from only five patients yields an intraclass correlation coefficient of 86% for severity score prediction. These results demonstrate the potential of chronological contrastive learning to exploit routinely available imaging metadata to reduce annotation requirements in the irreversible disease domain. Code is available at https://github.com/cirmuw/ChronoCon.
Anti-NMDAR encephalitis is the most common autoimmune encephalitis. When first-line treatments fail, second-line therapies are employed. However, a standardized approach for second-line treatment has yet to be established. We presented three cases of anti-NMDAR encephalitis with seizures and psychosis as the primary symptom. These patients showed inadequate response to initial treatments, including intravenous immunoglobulin, methylprednisolone, and plasma exchange. However, their symptoms were effectively controlled following subcutaneous administration of ofatumumab. Previous studies have reported that twelve cases of anti-NMDAR encephalitis were effectively treated with ofatumumab. In this study, the modified Rankin scale (mRS) scores at the last follow-up for all fifteen patients (including our three cases) were significantly lower compared to scores at the peak of the disease (p < 0.001). Thirteen patients achieved full recovery. These findings suggest that CD20 monoclonal antibodies, particularly ofatumumab, may offer a promising treatment option for anti-NMDAR encephalitis.
Reza Miry, Amit K. Chakraborty, Russell Greiner
et al.
Early Warning Signals (EWSs) are vital for implementing preventive measures before a disease turns into a pandemic. While new diseases exhibit unique behaviors, they often share fundamental characteristics from a dynamical systems perspective. Moreover, measurements during disease outbreaks are often corrupted by different noise sources, posing challenges for Time Series Classification (TSC) tasks. In this study, we address the problem of having a robust EWS for disease outbreak prediction using a best-performing deep learning model in the domain of TSC. We employed two simulated datasets to train the model: one representing generated dynamical systems with randomly selected polynomial terms to model new disease behaviors, and another simulating noise-induced disease dynamics to account for noisy measurements. The model's performance was analyzed using both simulated data from different disease models and real-world data, including influenza and COVID-19. Results demonstrate that the proposed model outperforms previous models, effectively providing EWSs of impending outbreaks across various scenarios. This study bridges advancements in deep learning with the ability to provide robust early warning signals in noisy environments, making it highly applicable to real-world crises involving emerging disease outbreaks.
This study addresses the challenges of symptom evolution complexity and insufficient temporal dependency modeling in Parkinson's disease progression prediction. It proposes a unified prediction framework that integrates structural perception and temporal modeling. The method leverages graph neural networks to model the structural relationships among multimodal clinical symptoms and introduces graph-based representations to capture semantic dependencies between symptoms. It also incorporates a Transformer architecture to model dynamic temporal features during disease progression. To fuse structural and temporal information, a structure-aware gating mechanism is designed to dynamically adjust the fusion weights between structural encodings and temporal features, enhancing the model's ability to identify key progression stages. To improve classification accuracy and stability, the framework includes a multi-component modeling pipeline, consisting of a graph construction module, a temporal encoding module, and a prediction output layer. The model is evaluated on real-world longitudinal Parkinson's disease data. The experiments involve comparisons with mainstream models, sensitivity analysis of hyperparameters, and graph connection density control. Results show that the proposed method outperforms existing approaches in AUC, RMSE, and IPW-F1 metrics. It effectively distinguishes progression stages and improves the model's ability to capture personalized symptom trajectories. The overall framework demonstrates strong generalization and structural scalability, providing reliable support for intelligent modeling of chronic progressive diseases such as Parkinson's disease.
Gustav Schmidt, Holger Heidrich, Philipp Berens
et al.
Learning from noisy ordinal labels is a key challenge in medical imaging. In this work, we ask whether ordinal disease progression labels (better, worse, or stable) can be used to learn a representation allowing to classify disease state. For neovascular age-related macular degeneration (nAMD), we cast the problem of modeling disease progression between medical visits as a classification task with ordinal ranks. To enhance generalization, we tailor our model to the problem setting by (1) independent image encoding, (2) antisymmetric logit space equivariance, and (3) ordinal scale awareness. In addition, we address label noise by learning an uncertainty estimate for loss re-weighting. Our approach learns an interpretable disease representation enabling strong few-shot performance for the related task of nAMD activity classification from single images, despite being trained only on image pairs with ordinal disease progression labels.
Christoffer G. Alexandersen, Georgia S. Brennan, Julia K. Brynildsen
et al.
Neurodegenerative diseases are characterized by the accumulation of misfolded proteins and widespread disruptions in brain function. Computational modeling has advanced our understanding of these processes, but efforts have traditionally focused on either neuronal dynamics or the underlying biological mechanisms of disease. One class of models uses neural mass and whole-brain frameworks to simulate changes in oscillations, connectivity, and network stability. A second class focuses on biological processes underlying disease progression, particularly prion-like propagation through the connectome, and glial responses and vascular mechanisms. Each modeling tradition has provided important insights, but experimental evidence shows these processes are interconnected: neuronal activity modulates protein release and clearance, while pathological burden feeds back to disrupt circuit function. Modeling these domains in isolation limits our understanding. To determine where and why disease emerges, how it spreads, and how it might be altered, we must develop integrated frameworks that capture feedback between neuronal dynamics and disease biology. In this review, we survey the two modeling approaches and highlight efforts to unify them. We argue that such integration is necessary to address key questions in neurodegeneration and to inform interventions, from targeted stimulation to control-theoretic strategies that slow progression and restore function.
Wheat yellow rust, caused by the fungus Puccinia striiformis, is a critical disease affecting wheat crops across Britain, leading to significant yield losses and economic consequences. Given the rapid environmental changes and the evolving virulence of pathogens, there is a growing need for innovative approaches to predict and manage such diseases over the long term. This study explores the feasibility of using deep learning models to predict outbreaks of wheat yellow rust in British fields, offering a proactive approach to disease management. We construct a yellow rust dataset with historial weather information and disease indicator acrossing multiple regions in England. We employ two poweful deep learning models, including fully connected neural networks and long short-term memory to develop predictive models capable of recognizing patterns and predicting future disease outbreaks.The models are trained and validated in a randomly sliced datasets. The performance of these models with different predictive time steps are evaluated based on their accuracy, precision, recall, and F1-score. Preliminary results indicate that deep learning models can effectively capture the complex interactions between multiple factors influencing disease dynamics, demonstrating a promising capacity to forecast wheat yellow rust with considerable accuracy. Specifically, the fully-connected neural network achieved 83.65% accuracy in a disease prediction task with 6 month predictive time step setup. These findings highlight the potential of deep learning to transform disease management strategies, enabling earlier and more precise interventions. Our study provides a methodological framework for employing deep learning in agricultural settings but also opens avenues for future research to enhance the robustness and applicability of predictive models in combating crop diseases globally.
Accurate diagnosis of Mendelian diseases is crucial for precision therapy and assistance in preimplantation genetic diagnosis. However, existing methods often fall short of clinical standards or depend on extensive datasets to build pretrained machine learning models. To address this, we introduce an innovative LLM-Driven multi-agent debate system (MD2GPS) with natural language explanations of the diagnostic results. It utilizes a language model to transform results from data-driven and knowledge-driven agents into natural language, then fostering a debate between these two specialized agents. This system has been tested on 1,185 samples across four independent datasets, enhancing the TOP1 accuracy from 42.9% to 66% on average. Additionally, in a challenging cohort of 72 cases, MD2GPS identified potential pathogenic genes in 12 patients, reducing the diagnostic time by 90%. The methods within each module of this multi-agent debate system are also replaceable, facilitating its adaptation for diagnosing and researching other complex diseases.
Agriculture is vital for global food security, but crops are vulnerable to diseases that impact yield and quality. While Convolutional Neural Networks (CNNs) accurately classify plant diseases using leaf images, their high computational demands hinder their deployment in resource-constrained settings such as smartphones, edge devices, and real-time monitoring systems. This study proposes a two-step model compression approach integrating Weight Pruning and Knowledge Distillation, along with the hybridization of DenseNet with Involutional Layers. Pruning reduces model size and computational load, while distillation improves the smaller student models performance by transferring knowledge from a larger teacher network. The hybridization enhances the models ability to capture spatial features efficiently. These compressed models are suitable for real-time applications, promoting precision agriculture through rapid disease identification and crop management. The results demonstrate ResNet50s superior performance post-compression, achieving 99.55% and 98.99% accuracy on the PlantVillage and PaddyLeaf datasets, respectively. The DenseNet-based model, optimized for efficiency, recorded 99.21% and 93.96% accuracy with a minimal parameter count. Furthermore, the hybrid model achieved 98.87% and 97.10% accuracy, supporting the practical deployment of energy-efficient devices for timely disease intervention and sustainable farming practices.
Given the severe challenges confronting the global growth security of economic crops, precise identification and prevention of plant diseases has emerged as a critical issue in artificial intelligence-enabled agricultural technology. To address the technical challenges in plant disease recognition, including small-sample learning, leaf occlusion, illumination variations, and high inter-class similarity, this study innovatively proposes a Dynamic Dual-Stream Fusion Network (DS_FusionNet). The network integrates a dual-backbone architecture, deformable dynamic fusion modules, and bidirectional knowledge distillation strategy, significantly enhancing recognition accuracy. Experimental results demonstrate that DS_FusionNet achieves classification accuracies exceeding 90% using only 10% of the PlantDisease and CIFAR-10 datasets, while maintaining 85% accuracy on the complex PlantWild dataset, exhibiting exceptional generalization capabilities. This research not only provides novel technical insights for fine-grained image classification but also establishes a robust foundation for precise identification and management of agricultural diseases.
Zhuangzhuang Jia, Hyuk Park, Gökçe Dayanıklı
et al.
Infectious diseases pose major public health challenges to society, highlighting the importance of designing effective policies to reduce economic loss and mortality. In this paper, we propose a framework for sequential decision-making under uncertainty to design fairness-aware disease mitigation policies that incorporate various measures of unfairness. Specifically, our approach learns equitable vaccination and lockdown strategies based on a stochastic multi-group SIR model. To address the challenges of solving the resulting sequential decision-making problem, we adopt the path integral control algorithm as an efficient solution scheme. Through a case study, we demonstrate that our approach effectively improves fairness compared to conventional methods and provides valuable insights for policymakers.
Michael Mullin, James McClory, Winston Haynes
et al.
The development of bispecific antibodies that bind at least two different targets relies on bringing together multiple binding domains with different binding properties and biophysical characteristics to produce a drug-like therapeutic. These building blocks play an important role in the overall quality of the molecule and can influence many important aspects from potency and specificity to stability and half-life. Single-domain antibodies, particularly camelid-derived variable heavy domain of heavy chain (VHH) antibodies, are becoming an increasingly popular choice for bispecific construction due to their single-domain modularity, favorable biophysical properties, and potential to work in multiple antibody formats. Here, we review the use of VHH domains as building blocks in the construction of multispecific antibodies and the challenges in creating optimized molecules. In addition to exploring traditional approaches to VHH development, we review the integration of machine learning techniques at various stages of the process. Specifically, the utilization of machine learning for structural prediction, lead identification, lead optimization, and humanization of VHH antibodies.
Emily A Hemann, Megan L Knoll, Courtney R Wilkins
et al.
Abstract Retinoic acid–inducible gene I (RIG-I) is essential for activating host cell innate immunity to regulate the immune response against many RNA viruses. We previously identified that a small molecule compound, KIN1148, led to the activation of IFN regulatory factor 3 (IRF3) and served to enhance protection against influenza A virus (IAV) A/California/04/2009 infection. We have now determined direct binding of KIN1148 to RIG-I to drive expression of IFN regulatory factor 3 and NF-κB target genes, including specific immunomodulatory cytokines and chemokines. Intriguingly, KIN1148 does not lead to ATPase activity or compete with ATP for binding but activates RIG-I to induce antiviral gene expression programs distinct from type I IFN treatment. When administered in combination with a vaccine against IAV, KIN1148 induces both neutralizing Ab and IAV-specific T cell responses compared with vaccination alone, which induces comparatively poor responses. This robust KIN1148-adjuvanted immune response protects mice from lethal A/California/04/2009 and H5N1 IAV challenge. Importantly, KIN1148 also augments human CD8+ T cell activation. Thus, we have identified a small molecule RIG-I agonist that serves as an effective adjuvant in inducing noncanonical RIG-I activation for induction of innate immune programs that enhance adaptive immune protection of antiviral vaccination.