Hasil untuk "q-bio.OT"

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S2 Open Access 2021
Dropout Q-Functions for Doubly Efficient Reinforcement Learning

Takuya Hiraoka, Takahisa Imagawa, Taisei Hashimoto et al.

Randomized ensembled double Q-learning (REDQ) (Chen et al., 2021b) has recently achieved state-of-the-art sample efficiency on continuous-action reinforcement learning benchmarks. This superior sample efficiency is made possible by using a large Q-function ensemble. However, REDQ is much less computationally efficient than non-ensemble counterparts such as Soft Actor-Critic (SAC) (Haarnoja et al., 2018a). To make REDQ more computationally efficient, we propose a method of improving computational efficiency called DroQ, which is a variant of REDQ that uses a small ensemble of dropout Q-functions. Our dropout Q-functions are simple Q-functions equipped with dropout connection and layer normalization. Despite its simplicity of implementation, our experimental results indicate that DroQ is doubly (sample and computationally) efficient. It achieved comparable sample efficiency with REDQ, much better computational efficiency than REDQ, and comparable computational efficiency with that of SAC.

155 sitasi en Computer Science
S2 Open Access 2011
Deterministic design of wavelength scale, ultra-high Q photonic crystal nanobeam cavities.

Q. Quan, M. Lončar

Photonic crystal nanobeam cavities are versatile platforms of interest for optical communications, optomechanics, optofluidics, cavity QED, etc. In a previous work [Appl. Phys. Lett. 96, 203102 (2010)], we proposed a deterministic method to achieve ultrahigh Q cavities. This follow-up work provides systematic analysis and verifications of the deterministic design recipe and further extends the discussion to air-mode cavities. We demonstrate designs of dielectric-mode and air-mode cavities with Q > 10⁹, as well as dielectric-mode nanobeam cavities with both ultrahigh-Q (> 10⁷) and ultrahigh on-resonance transmissions (T > 95%).

430 sitasi en Physics, Medicine
S2 Open Access 2003
Transverse-momentum and collision-energy dependence of high-pT hadron suppression in Au+Au collisions at ultrarelativistic energies.

J. Adams, C. Adler, M. Aggarwal et al.

We report high statistics measurements of inclusive charged hadron production in Au+Au and p+p collisions at sqrt[s(NN)]=200 GeV. A large, approximately constant hadron suppression is observed in central Au+Au collisions for 5<p(T)<12 GeV/c. The collision energy dependence of the yields and the centrality and p(T) dependence of the suppression provide stringent constraints on theoretical models of suppression. Models incorporating initial-state gluon saturation or partonic energy loss in dense matter are largely consistent with observations. We observe no evidence of p(T)-dependent suppression, which may be expected from models incorporating jet attenuation in cold nuclear matter or scattering of fragmentation hadrons.

562 sitasi en Physics, Medicine
S2 Open Access 2014
Introduction to Q-tensor theory

N. Mottram, C. Newton

This paper aims to provide an introduction to a basic form of the Q-tensor approach to modelling liquid crystals, which has seen increased interest in recent years. The increase in interest in this type of modelling approach has been driven by investigations into the fundamental nature of defects and new applications of liquid crystals such as bistable displays and colloidal systems for which a description of defects and disorder is essential. The work in this paper is not new research, rather it is an introductory guide for anyone wishing to model a system using such a theory. A more complete mathematical description of this theory, including a description of flow effects, can be found in numerous sources but the books by Virga and Sonnet and Virga are recommended. More information can be obtained from the plethora of papers using such approaches, although a general introduction for the novice is lacking. The first few sections of this paper will detail the development of the Q-tensor approach for nematic liquid crystalline systems and construct the free energy and governing equations for the mesoscopic dependent variables. A number of device surface treatments are considered and theoretical boundary conditions are specified for each instance. Finally, an example of a real device is demonstrated.

234 sitasi en Physics
arXiv Open Access 2021
Global alignment for relation extraction in Microbiology

Anfu Tang, Claire Nédellec, Pierre Zweigenbaum et al.

We investigate a method to extract relations from texts based on global alignment and syntactic information. Combined with SVM, this method is shown to have a performance comparable or even better than LSTM on two RE tasks.

en q-bio.OT, cs.CL
arXiv Open Access 2021
A Tutorial on the Mathematical Model of Single Cell Variational Inference

Songting Shi

As the large amount of sequencing data accumulated in past decades and it is still accumulating, we need to handle the more and more sequencing data. As the fast development of the computing technologies, we now can handle a large amount of data by a reasonable of time using the neural network based model. This tutorial will introduce the the mathematical model of the single cell variational inference (scVI), which use the variational auto-encoder (building on the neural networks) to learn the distribution of the data to gain insights. It was written for beginners in the simple and intuitive way with many deduction details to encourage more researchers into this field.

en q-bio.OT, cs.LG
arXiv Open Access 2021
The Practice of Ensuring Repeatable and Reproducible Computational Models

Herbert M. Sauro

Recent studies have shown that the majority of published computational models in systems biology and physiology are not repeatable or reproducible. There are a variety of reasons for this. One of the most likely reasons is that given how busy modern researchers are and the fact that no credit is given to authors for publishing repeatable work, it is inevitable that this will be the case. The situation can only be rectified when government agencies, universities and other research institutions change policies and that journals begin to insist that published work is in fact at least repeatable if not reproducible. In this chapter guidelines are described that can be used by researchers to help make sure their work is repeatable. A scoring system is suggested that authors can use to determine how well they are doing.

en q-bio.OT, q-bio.MN
S2 Open Access 2005
Optical bistable switching action of Si high-Q photonic-crystal nanocavities.

M. Notomi, A. Shinya, S. Mitsugi et al.

We have demonstrated all-optical bistable switching operation of resonant-tunnelling devices with ultra-small high-Q Si photonic-crystal nanocavities. Due to their high Q/V ratio, the switching energy is extremely small in comparison with that of conventional devices using the same optical nonlinear mechanism. We also show that they exhibit all-opticaltransistor action by using two resonant modes. These ultrasmall unique nonlinear bistable devices have potentials to function as various signal processing functions in photonic-crystal-based optical-circuits.

466 sitasi en Materials Science, Medicine
S2 Open Access 2012
From duality to determinants for q-TASEP and ASEP

A. Borodin, Ivan Corwin, T. Sasamoto

We prove duality relations for two interacting particle systems: the $q$-deformed totally asymmetric simple exclusion process ($q$-TASEP) and the asymmetric simple exclusion process (ASEP). Expectations of the duality functionals correspond to certain joint moments of particle locations or integrated currents, respectively. Duality implies that they solve systems of ODEs. These systems are integrable and for particular step and half-stationary initial data we use a nested contour integral ansatz to provide explicit formulas for the systems' solutions, and hence also the moments. We form Laplace transform-like generating functions of these moments and via residue calculus we compute two different types of Fredholm determinant formulas for such generating functions. For ASEP, the first type of formula is new and readily lends itself to asymptotic analysis (as necessary to reprove GUE Tracy--Widom distribution fluctuations for ASEP), while the second type of formula is recognizable as closely related to Tracy and Widom's ASEP formula [Comm. Math. Phys. 279 (2008) 815--844, J. Stat. Phys. 132 (2008) 291--300, Comm. Math. Phys. 290 (2009) 129--154, J. Stat. Phys. 140 (2010) 619--634]. For $q$-TASEP, both formulas coincide with those computed via Borodin and Corwin's Macdonald processes [Probab. Theory Related Fields (2014) 158 225--400]. Both $q$-TASEP and ASEP have limit transitions to the free energy of the continuum directed polymer, the logarithm of the solution of the stochastic heat equation or the Hopf--Cole solution to the Kardar--Parisi--Zhang equation. Thus, $q$-TASEP and ASEP are integrable discretizations of these continuum objects; the systems of ODEs associated to their dualities are deformed discrete quantum delta Bose gases; and the procedure through which we pass from expectations of their duality functionals to characterizing generating functions is a rigorous version of the replica trick in physics.

197 sitasi en Mathematics, Physics

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