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DOAJ Open Access 2026
Pregnancy-to-lactation transition remodels mammary adipocytes via p38 MAPK-dependent adipogenesis

Tao Luo, Nannan Jiang, Chaoqun Wu et al.

ABSTRACT: Adipose tissue remodeling is essential for mammary gland development and functional restoration. The dry period represents a pivotal phase characterized by extensive tissue remodeling as the gland transitions from pregnancy to lactation. However, the morphological and molecular mechanisms underlying mammary adipose tissue remodeling during this stage remain poorly understood. In this study, we investigated adipose remodeling in the mammary gland of dairy goats during this transitional period. An integrative multi-omics approach combining transcriptomics, lipidomics, and metabolomics was employed to comprehensively characterize the molecular changes of mammary tissue. Histological analysis and transmission electron microscopy revealed a substantial increase in both the proportion and size of adipocytes at 4 wk before prepartum. RNA sequencing of isolated mammary adipose cells indicated that the p38 mitogen-activated protein kinase (MAPK) pathway may play a key regulatory role in this process. To further dissect its function, we established an immortalized goat mammary preadipocyte cell line. Pharmacological inhibition of p38 MAPK significantly impaired adipocyte differentiation and hypertrophy. Furthermore, our findings suggested that p38 MAPK modulates adipogenesis in mammary adipocytes through downstream effectors, including apolipoprotein E. These findings highlight a critical role for the p38 MAPK signaling pathway in orchestrating mammary adipose tissue remodeling during the dry period. This work provides novel insights into the molecular regulation of mammary gland renewal and offers potential targets to manipulate mammary gland development in ruminants.

Dairy processing. Dairy products, Dairying
DOAJ Open Access 2026
Seroprevalence and Risk Factors of Cystic Echinococcosis in Cattle and Buffaloes: Insights From an In‐House ELISA

Mughees Aizaz Alvi, Talha Javaid, Majed H. Wakid et al.

ABSTRACT Background Cystic echinococcosis (CE) is a zoonotic disease caused by the larval stage of Echinococcus granulosus and associated with productivity and economic losses in the livestock population across the world. Objectives This cross‐sectional study spanned over a period of 1 year (2024) to determine the seroprevalence and associated risk factors of CE in large ruminants (cattle and buffaloes) hosted in different districts of Punjab, Pakistan, using an in‐house developed ELISA. Methods Overall, 430 serum samples from 197 buffaloes and 233 cattle were collected for detection of anti‐E. granulosus antibodies using an in‐house ELISA. Results The highest seropositivity rate (68.24%) was in cattle, whereas buffaloes had 19.28%. The geographical variation revealed that the lowest seropositivity rate (9.52%) was in Haroonabad, whereas Bahawalpur had the highest seropositivity rate (96.29%). Sex‐wise, females showed a seroprevalence of 46.13%, whereas males had a seroprevalence of 37.50%. Age‐wise trends showed that seropositivity increased up to 10–12 years of age, while decreasing in older animals. Breed‐wise, the highest seropositivity rate of 96.29% was observed in the Cholistani cattle, and the lowest rate of 25.25% was shown by Nili‐Ravi buffaloes. The LASSO model revealed a high prediction accuracy of 76.98% and an area under the curve (0.73), suggesting geographical and host‐related impacts on the epidemiology of CE. However, our findings indicate widespread seropositivity, the study does not evaluate production losses or economic impact, and our conclusion refers to epidemiological patterns. Conclusions There is a prompt need for targeted strategies under the One Health concept for region‐specific surveillance, improving animal husbandry practices and controlling definitive hosts, particularly in high‐risk areas of Pakistan.

Veterinary medicine
DOAJ Open Access 2024
Soil–Plant Characterization in Agrosilvopastoral System Established in a Fe-Mn Abandoned Mine After Long-Term Closure

Erika S. Santos, Maria Manuela Abreu, Sabina Rossini-Oliva

Small abandoned mining areas of Fe and Mn oxides located in the Portuguese sector of the Iberian Pyrite Belt (SW of Europe) have been converted into agrosilvopastoral systems with very few environmental management measures after their closure. Although at the landscape scale, no visible differences were observed between the former mining intervention areas and adjacent areas, it is essential to assess the state and environmental risk of the soil–plant system, especially in the herbaceous pastures grazed by domestic animals. This was carried out in the Ferragudo mining area, where an agrosilvopastoral system, composed of holm oak and dryland pasture, had been established after the closure of the mine at ≈45 years. The soils presented neutral pH and variable fertility degree. The pseudo-total soil concentrations of Cu, Mo, and Zn exceeded the Portuguese limit values established for agriculture use (>180 mg Cu/kg; >8.2 mg Mo/kg; 349 mg Zn/kg), but their soil available fractions were small (<8.4% of the pseudo-total concentrations). Trees and herbaceous plants showed good development, and the concentrations of the elements (except Mn) were considered normal or sufficient. For Mn, most of the plant samples exceeded phytotoxic Mn values, but no visual signs of phytotoxicity were observed. Only the concentrations of Fe and K in the shoots of some herbaceous samples exceeded the maximum tolerable levels for cattle and sheep, so the risk to animals can be considered small since other sources are present in animal feed. In general, this agrosilvopastoral system did not pose a significant environmental risk.

DOAJ Open Access 2024
Properties of Pasteurella multocida isolated from animals during the seasonal migration of saigas

U. Taubaev, A. Ichshanova, Zh. Kirkimbaeva et al.

Abstract The paper describes data from the study of cultural, morphological, and biochemical properties and the pathogenicity and virulence of epizootic isolates of Pasteurella multocida obtained from cattle and saigas. The study aimed to investigate the properties of P. multocida isolated from saigas and cattle during their seasonal migration, with a focus on its role in the epizootic process and potential transmission to farm animals. The research was conducted in a laboratory setting at the West Kazakhstan Agrarian-Technical University. White mice, saigas, and cattle were examined, and pathological and bacteriological analyses were performed on tissues and secretions. Pathogenicity, virulence, and toxigenicity of the isolated Pasteurella cultures were determined through biological tests on white mice. The morphological, cultural, and biochemical properties of the isolates were studied using standard microbiological methods. The study found that P. multocida isolates from both saigas and cattle exhibited high pathogenicity and virulence when tested on white mice. The isolates from sick and dead animals displayed 65.3 and 83.3% pathogenicity, respectively. The isolates were toxic to white mice, with filtrate dilutions showing 100% toxigenicity. Comparative analysis showed morphological and cultural similarities between Pasteurella isolates from saigas and cattle, confirming their identity. This research demonstrates that P. multocida, isolated from both saigas and cattle, contributes to the epizootic process and poses a threat to farm animals. Saigas, in particular, play a role in disease transmission during seasonal migrations. Understanding the ecological interactions between wild and farm animals is crucial for implementing preventive measures to control the spread of infectious diseases, emphasizing the need for comprehensive monitoring and intervention strategies.

Science, Biology (General)
DOAJ Open Access 2024
Effect of nicotinic acid supplementation on digestion, metabolism, microbiome, and production in late-lactation Holstein cows

R.B. Standish, A.D. Wright, N.L. Whitehouse et al.

ABSTRACT: The purpose of this experiment was to determine if nicotinic acid (NA) effects on dairy cows and rumen microbial characteristics are forage-type dependent (corn silage, CS; grass silage, GS). Four late-lactation (DIM = 225 ± 12 d) Holstein cows were used in a 4 × 4 Latin square design with a 2 × 2 factorial arrangement of treatments. The main effects were a CS (66.10% CS) based diet or a GS (79.59%) based diet with or without 12 g/d NA. Each experimental period lasted for 28 d. Milk production and milk components, blood metabolites, apparent total-tract nutrient digestibilities, minutes rumen pH were below 5.8 as an indicator of ruminal acidosis, and body temperature changes were analyzed as indicators of heat stress. Nicotinic acid supplementation did not improve apparent total-tract nutrient digestibility. Feeding a GS-based diet improved NDF and hemicellulose digestibility. Feeding a CS-based diet increased the apparent total-tract digestibility of fat, and minutes rumen pH below 5.8 for a greater proportion of the time. The CS-based diet also improved milk yield, milk fat and protein yields, and ECM yield; however, somatic cell count and BHB were also increased. Supplementing NA tended to decrease nonesterified fatty acids, especially when combined with GS where DMI was low. There was a trend for the total protozoa population to increase when GS and NA were fed but decreased when CS and NA were fed. Nicotinic acid tended to decrease rumen protozoal populations of Dasytricha, but increased populations of Ophryoscolex and Diplodiniinae with GS diets and decreased with CS diets. Entodiniinae were increased with CS but NA had no effect. Body temperature was increased when a CS-based diet was fed when compared with a GS-based diet. More research is needed to determine how NA can affect rumen microbial protein synthesis and what kind of diets will provide the optimum effect.

Dairy processing. Dairy products, Dairying
DOAJ Open Access 2024
Predictive Mapping of Antimicrobial Resistance for Escherichia coli, Salmonella, and Campylobacter in Food-Producing Animals, Europe, 2000–2021

Ranya Mulchandani, Cheng Zhao, Katie Tiseo et al.

In Europe, systematic national surveillance of antimicrobial resistance (AMR) in food-producing animals has been conducted for decades; however, geographic distribution within countries remains unknown. To determine distribution within Europe, we combined 33,802 country-level AMR prevalence estimates with 2,849 local AMR prevalence estimates from 209 point prevalence surveys across 31 countries. We produced geospatial models of AMR prevalence in Escherichia coli, nontyphoidal Salmonella, and Campylobacter for cattle, pigs, and poultry. We summarized AMR trends by using the proportion of tested antimicrobial compounds with resistance >50% and generated predictive maps at 10 × 10 km resolution that disaggregated AMR prevalence. For E. coli, predicted prevalence rates were highest in southern Romania and southern/eastern Italy; for Salmonella, southern Hungary and central Poland; and for Campylobacter, throughout Spain. Our findings suggest that AMR distribution is heterogeneous within countries and that surveillance data from below the country level could help with prioritizing resources to reduce AMR.

Medicine, Infectious and parasitic diseases
DOAJ Open Access 2024
Valuation of the Energy Potential of Agrozootehnic Waste

Roxana MITROI, Cristina Ileana COVALIU-MIERLĂ, Cristina-Emanuela ENĂȘCUȚĂ et al.

The anaerobic digestion of animal manure is a promising treatment solution allowing its partial conversion to energy, in the form of biogas. Anaerobic digestion technology is thus considered not only as a way to solve environmental problems, but also as a potential source of energy, while also contributing to solving economic and social problems. This research investigates the potential of poultry, cattle and pig waste for biogas production through the anaerobic digestion process. A number of 15 recipes had been prepared and studied, each consisting of a mixture of organic materials with a concentration of 10% total solids (animal waste, vegetable waste, food waste), in different proportions. The raw material mixtures (representing the substrates) respected a C/N ratio between 15 and 25. The substrate composition influence on the production of biogas was investigated. Different types of animal manure have been found to produce varying rates of biogas, with certain types yielding higher or more stable levels. In this installation, efficient biogas production was observed after seven days of anaerobic digestion, with the most effective mixtures being those with a higher proportion of grass.

DOAJ Open Access 2023
Morphological, radiographic, three-dimensional computed tomographic, and histological features of the primary upstroke and downstroke muscles and bones in the domestic duck (Anas platyrhynchos domesticus) and the cattle egret (Bubulcus ibis, Linnaeus, 1758), reflecting the evolutionary transition towards the irreversible flightlessness

Hanaa M. El-Ghazali, Ahmed Abdelbaset-Ismail, Nehal I. A. Goda et al.

Abstract Background The purpose of this study was to explore whether domestication could lead to evolutionary changes towards flightlessness in the domestic duck (Anas platyrhynchos domesticus) compared to the cattle egret (Bubulcus ibis) as a nonflying and flying biological model, respectively. Bones of the pectoral girdle (scapula, clavicle, and coracoid) and the foramen triosseum were comparatively assessed using anatomical, radiographic, and 3D computed tomographic (CT) studies. Additionally, the muscles pectoralis and the supracoracoideus were histologically and immunohistochemically assessed. Results Among the differences observed, radiographically, the distance between the paired clavicles was significantly wider (p < 0.05) in the domestic duck (mean ± SD 1.43 ± 0.23 cm) compared with the cattle egret (0.96 ± 0.13 cm). Unlike cattle egrets, there was no connection between the sternum and the hypocladium of furcula in domestic ducks. The scapula, clavicle, coracoid, sternum, and humerus were considerably longer in domestic ducks than in cattle egrets. The foramen triosseum appeared significantly (p < 0.01) wider in domestic ducks (0.7 ± 1.17 cm) compared to cattle egrets (0.49 ± 0.03 cm). Histologically, compared to cattle egrets, the muscle fibers in domestic ducks were loosely connected and contained fewer nuclei and perimysial/endomysial spaces. A higher myoglobin expression was evident in cattle egrets compared with domestic ducks. Conclusions Results of this study indicate that the bones and muscles of the pectoral girdle generally show specific morphological and structural changes reflective of the loss of prerequisites associated with flight behavior in domestic ducks due to domestication effects compared to cattle egrets.

Veterinary medicine
DOAJ Open Access 2023
Ethnoveterinary survey of trypanocidal medicinal plants of the beninese pharmacopoeia in the management of bovine trypanosomosis in North Benin (West Africa)

Christophe Iwaka, Erick Virgile Bertrand Azando, Thierry Dehouegnon Houehanou et al.

Cattle breeding is of great socio-economic importance for Benin's cattle farmers in general and those of North Benin in particular. The objective of this study is to inventory the natural products of medicinal plants of the Beninese pharmacopoeia for the management of trypanosomes in cattle in North Benin. The methodology consisted of individual and semi-structured interviews with cattle farmers on the use of medicinal plants. A total of 360 cattle farmers were selected and interviewed in twelve villages in four municipalities (Tchaourou, N'dali, Bembèrèkè and Gogounou) in northern Benin. Different quantitative ethnobotanical indices were calculated to determine the level of use of plant species. The Relative Frequency of Citation (RFC), the Informant Consensus Factor (ICF = 0.918) and the Generic Coefficient (Rg = 1.04) were evaluated. The knowledge of medicinal plants was influenced by the level of education and the main activity of those who practiced animal husbandry. The results yielded 48 medicinal plants for veterinary use belonging to 46 genera and 28 families. The Leguminosae family (12.50%) was the most represented. The most cited plants with a RFC above 10% were K. senegalensis, P. africana, K. africana, M. inermis, S. latifolius, M. polyandra. The parts used were leaves (46.15%); barks (24.62%) and roots (15.38%). Decoction (53.23%), plundering (32.26%) and maceration (11.26%) were the main methods of preparation. The administration was mainly by oral route. The calculated indices show a high diversity of medicinal plants with trypanocidal properties in the control of cattle trypanosomosis in the Sudanese and Sudano-Guinean zones of northern Benin. Plant species with high citation and RFC values should be selected for comprehensive pharmacological and phytochemical research to validate this ethnomedical knowledge in the management of cattle trypanosomosis.

Science (General), Social sciences (General)
DOAJ Open Access 2022
Genetic characterisation of the Theileria annulata cytochrome b locus and its impact on buparvaquone resistance in bovine

Qasim Ali, Osama Zahid, Moez Mhadhbi et al.

Control of tropical theileriosis, caused by the apicomplexan Theileria annulata, depends on the use of a single drug, buparvaquone, the efficacy of which is compromised by the emergence of resistance. The present study was undertaken to improve understanding of the role of mutations conferring buparvaquone resistance in T. annulata, and the effects of selection pressures on their emergence and spread. First, we investigated genetic characteristics of the cytochrome b locus associated with buparvaquone resistance in 10 susceptible and 7 resistant T. annulata isolates. The 129G (GGC) mutation was found in the Q01 binding pocket and 253S (TCT) and 262S (TCA) mutations were identified within the Q02 binding pocket. Next, we examined field isolates and identified cytochrome b mutations 129G (GGC), 253S (TCT) and 262S (TCA) in 21/75 buffalo-derived and 19/119 cattle-derived T. annulata isolates, providing evidence of positive selection pressure. Both hard and soft selective sweeps were identified, with striking differences between isolates. For example, 19 buffalo-derived and 7 cattle-derived isolates contained 129G (GGC) and 253S (TCT) resistance haplotypes at a high frequency, implying the emergence of resistance by a single mutation. Two buffalo-derived and 12 cattle-derived isolates contained equally high frequencies of 129G (GGC), 253S (TCT), 129G (GGC)/253S (TCT) and 262S (TCA) resistance haplotypes, implying the emergence of resistance by pre-existing or recurrent mutations. Phylogenetic analysis further revealed that 9 and 21 unique haplotypes in buffalo and cattle-derived isolates were present in a single lineage, suggesting a single origin. We propose that animal migration between farms is an important factor in the spread of buparvaquone resistance in endemic regions of Pakistan. The overall outcomes will be useful in understanding how drug resistance emerges and spreads, and this information will help design strategies to optimise the use and lifespan of the single most drug use to control tropical theileriosis.

Infectious and parasitic diseases
DOAJ Open Access 2022
<i>Mannheimia haemolytica</i> Negatively Affects Bovine Herpesvirus Type 1.1 Replication Capacity In Vitro

Caitlyn A. Cowick, Brynnan P. Russ, Anna R. Bales et al.

Bovine Respiratory Disease (BRD) is a multifactorial condition affecting cattle worldwide resulting in high rates of morbidity and mortality. The disease can be triggered by Bovine Herpesvirus-1 (BoHV-1) infection, stress, and the subsequent proliferation and lung colonization by commensal bacteria such as <i>Mannheimia haemolytica</i>, ultimately inducing severe pneumonic inflammation. Due to its polymicrobial nature, the study of BRD microbes requires co-infection models. While several past studies have mostly focused on the effects of co-infection on host gene expression, we focused on the relationship between BRD pathogens during co-infection, specifically on <i>M. haemolytica’s</i> effect on BoHV-1 replication. This study shows that <i>M. haemolytica</i> negatively impacts BoHV-1 replication in a dose-dependent manner in different in vitro models. The negative effect was observed at very low bacterial doses while increasing the viral dose counteracted this effect. Viral suppression was also dependent on the time at which each microbe was introduced to the cell culture. While acidification of the culture medium did not grossly affect cell viability, it significantly inhibited viral replication. We conclude that <i>M. haemolytica</i> and BoHV-1 interaction is dose and time-sensitive, wherein <i>M. haemolytica</i> proliferation induces significant viral suppression when the viral replication program is not fully established.

Biology (General)
DOAJ Open Access 2021
Effects of nutrient restriction on the metabolic profile of Bos indicus-influenced and B. taurus suckled beef cows

P.L.P. Fontes, N. Oosthuizen, F.M. Ciriaco et al.

Recent research from our group demonstrated that Bos indicus-influenced suckled beef cows had greater resilience to withstand nutrient restriction and establish pregnancy compared with B. taurus cows exposed to the same conditions. To further understand these findings, differences in metabolic profile between these same B. indicus-influenced and B. taurus females were explored. Suckled beef cows (n = 134) were enrolled in a completely randomized design with a 2 × 2 factorial arrangement of treatments. On day −21, Angus (AN; Bos taurus) and Brangus (BN; B. indicus-influenced) cows were randomly assigned to 1) a diet that met daily energy maintenance requirements (MAINT), or 2) a diet that restricted intake to 70% of the daily energy maintenance requirements (RESTR). Cows were exposed to an estrus synchronization protocol and received an embryo 7 d after ovulation was pharmacologically induced on day 0. Blood samples were collected on days −21 and 19 to determine circulating concentrations of non-esterified fatty acids (NEFA), β-hydroxybutyrate (BHB), insulin, glucose, and IGF-1. Pregnancy status after embryo transfer was determined on day 28. As a consequence of the proposed diets, cows in the RESTR diet had less body condition score (BCS) on day 19 (P = 0.008) across breed types. Moreover, BCS change from day −21 to 19 was included as independent covariate into subsequent analyses, allowing for the comparison of breed types under an equivalent level of body reserve mobilization. A breed × diet interaction was observed for plasma insulin (P = 0.03) and IGF-1 (P = 0.04) on day 19, where AN–RESTR cows had less plasma concentrations on day 19 compared with AN–MAINT cows. Diets did not impact (P > 0.10) plasma insulin and IGF-1 concentrations in BN cows. No diet or breed effects were observed in circulating concentrations of NEFA, BHB, and glucose (P > 0.10). Across breed types and nutritional treatment, there was positive linear effect (P ≤ 0.04) of plasma concentrations of insulin and IGF-1 on the probability of pregnancy to fixed-time embryo transfer. In summary, the negative impacts of nutrient restriction on the somatotropic axis, independently of body tissue mobilization, were heightened in Bos taurus females compared with B. indicus-influenced cohorts, which corroborate with the differences observed in fertility between these subspecies.

DOAJ Open Access 2021
The Effect of Different Sources of Selenium Supplementation on the Meat Quality Traits of Young Charolaise Bulls during the Finishing Phase

Silvia Grossi, Luciana Rossi, Michele De Marco et al.

The aim of the study was to compare the effects of sodium selenite (SS), selenium yeast (SY), and hydroxy-selenomethionine (OH-SeMet) on the meat quality and selenium (Se) deposition of finishing beef cattle. Sixty-three bulls were distributed over 3 treatments and fed SS, SY, or OH-SeMet at 0.2 mg kg<sup>−1</sup> dry matter (DM) for 60 d. None of the Se sources affected the growth performance or carcass characteristics. OH-SeMet showed a higher Se transfer to the meat than SS or SY (<i>p</i> < 0.01). SY and OH-SeMet reduced the shear force of the meat (<i>p</i> < 0.0001), improved pH (<i>p</i> < 0.001), and reduced the drip losses (<i>p</i> < 0.001) and the lipid oxidation of the meat (<i>p</i> < 0.001). During 8 d of storage, OH-SeMet showed higher levels of meat lightness (L*) and yellowness (b*) than SS (<i>p</i> < 0.001), while the SY meat showed a higher L* than SS, albeit only on d 6. OH-SeMet improved b*, compared to SS, and also compared to SY on days 4, 7, and 8 (<i>p</i> < 0.001). Supplementing beef with SY and OH-SeMet improved several meat quality parameters. OH-SeMet appears to be the most effective strategy to improve the Se content and color stability of beef cattle meat.

Therapeutics. Pharmacology
DOAJ Open Access 2021
Differences in the fecal microbiota of dairy calves reared with differing sources of milk and levels of maternal contact

Annabelle Beaver, Charisse Petersen, Daniel M. Weary et al.

The practice of rearing cows and calves together is gaining popularity on dairy farms, with different systems currently under assessment in mainland Europe, the United Kingdom, and Oceania. Research into the effects of cow–calf rearing has primarily focused on direct health and welfare implications, and little work has examined the role of different rearing paradigms on calf microbiota. We trialed a cow–calf rearing system on a Canadian dairy farm and compared fecal microbiota of these calves with the microbiota of calves reared according to the conventional practice of the same farm (separated from the dam and fed waste milk). At 4 wk, the conventionally reared calves had reduced relative abundance of Lactobacillus and higher relative abundance of other taxa, including Sutterella, Prevotella, and Bacteroides. We also detected predicted functional differences, such as reduced l-tryptophan biosynthesis in conventionally reared calves. These results suggest that maternal contact may influence the calf microbiota, but the observed differences are also likely related to other aspects of the rearing environment independent of maternal contact (e.g., potential exposure to antibiotic residues in waste milk). These findings provide preliminary evidence of the effects of early rearing environments on the establishment of the dairy calf fecal microbiota. This research is needed, given the critical role of the bovine gut microbiome in behavioral, metabolic, and immune development.

Dairy processing. Dairy products
DOAJ Open Access 2021
Nucleic Acid-Based Sensing Techniques for Diagnostics and Surveillance of Influenza

Samantha J. Courtney, Zachary R. Stromberg, Jessica Z. Kubicek-Sutherland

Influenza virus poses a threat to global health by causing seasonal outbreaks as well as three pandemics in the 20th century. In humans, disease is primarily caused by influenza A and B viruses, while influenza C virus causes mild disease mostly in children. Influenza D is an emerging virus found in cattle and pigs. To mitigate the morbidity and mortality associated with influenza, rapid and accurate diagnostic tests need to be deployed. However, the high genetic diversity displayed by influenza viruses presents a challenge to the development of a robust diagnostic test. Nucleic acid-based tests are more accurate than rapid antigen tests for influenza and are therefore better candidates to be used in both diagnostic and surveillance applications. Here, we review various nucleic acid-based techniques that have been applied towards the detection of influenza viruses in order to evaluate their utility as both diagnostic and surveillance tools. We discuss both traditional as well as novel methods to detect influenza viruses by covering techniques that require nucleic acid amplification or direct detection of viral RNA as well as comparing advantages and limitations for each method. There has been substantial progress in the development of nucleic acid-based sensing techniques for the detection of influenza virus. However, there is still an urgent need for a rapid and reliable influenza diagnostic test that can be used at point-of-care in order to enhance responsiveness to both seasonal and pandemic influenza outbreaks.

DOAJ Open Access 2020
Identification of candidate genes for milk production traits by RNA sequencing on bovine liver at different lactation stages

Qian Li, Ruobing Liang, Yan Li et al.

Abstract Background RNA-sequencing was performed to explore the bovine liver transcriptomes of Holstein cows to detect potential functional genes related to lactation and milk composition traits in dairy cattle. The bovine transcriptomes of the nine liver samples from three Holstein cows during dry period (50-d prepartum), early lactation (10-d postpartum), and peak of lactation (60-d postpartum) were sequenced using the Illumina HiSeq 2500 platform. Results A total of 204, 147 and 81 differentially expressed genes (DEGs, p < 0.05, false discovery rate q < 0.05) were detected in early lactation vs. dry period, peak of lactation vs. dry period, and peak of lactation vs. early lactation comparison groups, respectively. Gene ontology and KEGG pathway analysis showed that these DEGs were significantly enriched in specific biological processes related to metabolic and biosynthetic and signaling pathways of PPAR, AMPK and p53 (p < 0.05). Ten genes were identified as promising candidates affecting milk yield, milk protein and fat traits in dairy cattle by using an integrated analysis of differential gene expression, previously reported quantitative trait loci (QTL), data from genome-wide association studies (GWAS), and biological function information. These genes were APOC2, PPP1R3B, PKLR, ODC1, DUSP1, LMNA, GALE, ANGPTL4, LPIN1 and CDKN1A. Conclusion This study explored the complexity of the liver transcriptome across three lactation periods in dairy cattle by performing RNA sequencing. Integrated analysis of DEGs and reported QTL and GWAS data allowed us to find ten key candidate genes influencing milk production traits.

DOAJ Open Access 2018
RNA-Seq Meta-analysis identifies genes in skeletal muscle associated with gain and intake across a multi-season study of crossbred beef steers

Brittney N. Keel, Christina M. Zarek, John W. Keele et al.

Abstract Background Feed intake and body weight gain are economically important inputs and outputs of beef production systems. The purpose of this study was to discover differentially expressed genes that will be robust for feed intake and gain across a large segment of the cattle industry. Transcriptomic studies often suffer from issues with reproducibility and cross-validation. One way to improve reproducibility is by integrating multiple datasets via meta-analysis. RNA sequencing (RNA-Seq) was performed on longissimus dorsi muscle from 80 steers (5 cohorts, each with 16 animals) selected from the outside fringe of a bivariate gain and feed intake distribution to understand the genes and pathways involved in feed efficiency. In each cohort, 16 steers were selected from one of four gain and feed intake phenotypes (n = 4 per phenotype) in a 2 × 2 factorial arrangement with gain and feed intake as main effect variables. Each cohort was analyzed as a single experiment using a generalized linear model and results from the 5 cohort analyses were combined in a meta-analysis to identify differentially expressed genes (DEG) across the cohorts. Results A total of 51 genes were differentially expressed for the main effect of gain, 109 genes for the intake main effect, and 11 genes for the gain x intake interaction (Pcorrected < 0.05). A jackknife sensitivity analysis showed that, in general, the meta-analysis produced robust DEGs for the two main effects and their interaction. Pathways identified from over-represented genes included mitochondrial energy production and oxidative stress pathways for the main effect of gain due to DEG including GPD1, NDUFA6, UQCRQ, ACTC1, and MGST3. For intake, metabolic pathways including amino acid biosynthesis and degradation were identified, and for the interaction analysis the pathways identified included GADD45, pyridoxal 5’phosphate salvage, and caveolar mediated endocytosis signaling. Conclusions Variation among DEG identified by cohort suggests that environment and breed may play large roles in the expression of genes associated with feed efficiency in the muscle of beef cattle. Meta-analyses of transcriptome data from groups of animals over multiple cohorts may be necessary to elucidate the genetics contributing these types of biological phenotypes.

Biotechnology, Genetics
DOAJ Open Access 2018
Algometer Precision for Quantifying Mechanical Nociceptive Threshold When Applied to the Udder of Lactating Dairy Cows

Catarina Krug, Catarina Krug, Trevor J. Devries et al.

Objectives of this study were to: (1) quantify the reliability of an algometer for measuring mechanical nociceptive thresholds when applied to the udder of dairy cows; and (2) evaluate whether covariates, such as cow characteristics or time of the day, would influence algometer measurements. This prospective study was performed in a university herd of 37 lactating cows during five consecutive days, involving two raters. Two types of measurement were obtained: one qualitative binary measure (i.e., reaction vs. no reaction) and one quantitative measure presented in kilograms (i.e., mechanical nociceptive threshold, MNT) for the cows that reacted. Kappa statistics were used to investigate test-retest and inter-rater reliability for the qualitative measure, while concordance correlation coefficient (CCC) and limits of agreement plot were used for the quantitative measure. Whether algometer measurements were influenced by several covariates (i.e., time of the day, level of milk production, days in milk, and parity) was then evaluated using logistic or linear regression models, depending on the outcome. The algometer was moderately reliable; there was moderate test-retest reliability (Kappa = 0.53; CCC = 0.58) and inter-rater reliability (Kappa = 0.42; CCC = 0.54). The MNT varied substantially as a function of time of the day and parity. This is the first study reporting reliability of a pressure algometer for quantifying MNT and investigating covariates possibly affecting this measurement when applied to the udder of dairy cows. It is concluded that the use of an algometer for quantifying MNT on the udder is only moderately repeatable and is influenced by extraneous covariates. Its usage in research setting to quantify changes in sensitivity at the udder level should, therefore, be considered very cautiously or it should be further developed.

Veterinary medicine
DOAJ Open Access 2014
The epidemiology of tick-borne relapsing fever in Bijar County, North-Western Iran

Hamid Kassiri, Ali Kasiri, Kobra Dostifar et al.

To explain the demographic and epidemiological aspects of found cases of illness in the Bijar County, north-western Iran, in the year of 2007-2008. Methods: In this descriptive study population included all febrile cases referring to health services centers of Bijar County. A confirmed case was defined as an individual who had both febrile disease and detection of Borrelia in a peripheral blood smear by Wright-Giemsa using dark-field microscop. Each patient was asked to fulfill a questionnaire including clinical and epidemiological features and demographic information of TBRF. Results: During the year of 2007-2008, 11 cases have been reported from Bijar County. There were 5 cases (45.4%) of the patients younger than 10 years, 6 cases (54.5%) were 10–19 years old. Of the patients, 63.6% occurred in summer and 27.3% in spring. All cases developed during the months of May to October. Fever and chills, the most common symptoms, occured in all patients. Most (54.5%) of the cases were students and the remaining were children. Approximately 72.7% of the patients were keeping cattle and sheep near or inside their homes. Conclusions: As showed, TBRF is a remarkable public health challenge, particularly for children and students living in Bijar County.

Medical emergencies. Critical care. Intensive care. First aid
DOAJ Open Access 2009
Geographic conditions for distribution of agriculture and potentials for tourism development on Mokra mountain

Knežević Marko, Knežević Danilo

This work considers important natural conditions of distribution of agricultural production, cattle breeding in particular, and also potentials for tourism development on Mokra mountain. Half-nomadic cattle breeding in mountain settlements was highly developed in recent past. It represented the main source of existence for local highlanders. Today it is neglected and in phase of dying out. The mountain disposes with excellent natural potentials for ecological and mountain tourism, but these potentials are unused.

Geography (General)

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