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arXiv Open Access 2025
Metric/Nonmetric Elastic MDS

Jan de Leeuw

We present R and C implementations for metric (ratio) and non-metric (ordinal) versions of Elastic MDS, the multidimensional scaling technique proposed by McGee (1966). The R and C versions are compared for speed, with the C version anywhere from 15 to 100 times as fast as the R version.

en stat.CO
arXiv Open Access 2025
Matrix Completion Survey: Theory, Algorithms, and Empirical Evaluation

Connor Panish, Leo Villani

We present a concise survey of matrix completion methods and associated implementations of several fundamental algorithms. Our study covers both passive and adaptive strategies. We further illustrate the behavior of a simple adaptive sampling scheme through controlled synthetic experiments.

en stat.CO
arXiv Open Access 2021
Choice of Damping Coefficient in Langevin Dynamics

Robert D. Skeel, Carsten Hartmann

This article considers the application of Langevin dynamics to sampling and investigates how to choose the damping parameter in Langevin dynamics for the purpose of maximizing thoroughness of sampling. Also, it considers the computation of measures of sampling thoroughness.

en stat.CO
arXiv Open Access 2018
Inference with Hamiltonian Sequential Monte Carlo Simulators

Remi Daviet

The paper proposes a new Monte-Carlo simulator combining the advantages of Sequential Monte Carlo simulators and Hamiltonian Monte Carlo simulators. The result is a method that is robust to multimodality and complex shapes to use for inference in presence of difficult likelihoods or target functions. Several examples are provided.

en stat.CO
arXiv Open Access 2018
ABC Samplers

Y. Fan, S. A. Sisson

This Chapter, "ABC Samplers", is to appear in the forthcoming Handbook of Approximate Bayesian Computation (2018). It details the main ideas and algorithms used to sample from the ABC approximation to the posterior distribution, including methods based on rejection/importance sampling, MCMC and sequential Monte Carlo.

en stat.CO, stat.ME
arXiv Open Access 2017
Wave function representation of probability distributions

Madeleine B. Thompson

Orthogonal decomposition of the square root of a probability density function in the Hermite basis is a useful low-dimensional parameterization of continuous probability distributions over the reals. This representation is formally similar to the representation of quantum mechanical states as wave functions, whose squared modulus is a probability density.

en stat.CO
arXiv Open Access 2017
A Fast Algorithm for Solving Henderson's Mixed Model Equation

Jiwoong Kim

This article investigates a fast and stable method to solve Henderson's mixed model equation. The proposed algorithm is stable in that it avoids inverting a matrix of a large dimension and hence is free from the curse of dimensionality. This tactic is enabled through row operations performed on the design matrix.

en stat.CO
arXiv Open Access 2016
Efficient Kernel Convolution for Smooth Surfaces without Edge Effects

Alexander Gribov

One of the most efficient ways to produce unconditional simulations is with the kernel convolution using fast Fourier transform (FFT) [1]. However, when data is located on a surface, this approach is not efficient because data needs to be processed in a three-dimensional enclosing box. This paper describes a novel approach based on integer transformation to reduce the volume of the enclosing box.

en stat.CO
arXiv Open Access 2016
Chunked-and-Averaged Estimators for Vector Parameters

Hien D. Nguyen, Geoffrey J. McLachlan

A divide-and-conquer method for parameter estimation is the chunked-and-averaged (CA) estimator. CA estimators have been studied for univariate parameters under independent and identically distributed (IID) sampling. We study the CA estimators of vector parameters and under non-IID sampling.

en stat.CO
arXiv Open Access 2016
KoulMde: An R Package for Koul's Minimum Distance Estimation

Jiwoong Kim

This article provides a full description of the R package KoulMde which is designed for Koul's minimum distance estimation method. When we encounter estimation problems in the linear regression and autogressive models, this package provides more efficient estimators than other R packages.

en stat.CO
arXiv Open Access 2015
A Turning Band Approach to Kernel Convolution for Arbitrary Surfaces

Alexander Gribov

One of the most efficient ways to produce unconditional simulations is with the spectral method using fast Fourier transform (FFT) [1]. But this approach is not applicable to arbitrary surfaces because no regular grid exists. However, points on the arbitrary surface can be generated randomly using uniform distribution to replace a regular grid. This paper will describe a nonstationary kernel convolution approach for data on arbitrary surfaces.

en stat.CO
arXiv Open Access 2013
Clustering Via Nonparametric Density Estimation: the R Package pdfCluster

Adelchi Azzalini, Giovanna Menardi

The R package pdfCluster performs cluster analysis based on a nonparametric estimate of the density of the observed variables. After summarizing the main aspects of the methodology, we describe the features and the usage of the package, and finally illustrate its working with the aid of two datasets.

en stat.CO
arXiv Open Access 2012
On Simulations from the Two-Parameter Poisson-Dirichlet Process and the Normalized Inverse-Gaussian Process

Luai Al Labadi, Mahmoud Zarepour

In this paper, we develop simple, yet efficient, procedures for sampling approximations of the two-Parameter Poisson-Dirichlet Process and the normalized inverse-Gaussian process. We compare the efficiency of the new approximations to the corresponding stick-breaking approximations, in which we demonstrate a substantial improvement.

en stat.CO
arXiv Open Access 2007
Particle Filters for Multiscale Diffusions

Anastasia Papavasiliou

We consider multiscale stochastic systems that are partially observed at discrete points of the slow time scale. We introduce a particle filter that takes advantage of the multiscale structure of the system to efficiently approximate the optimal filter.

en stat.CO