Semantic Scholar Open Access 2011 1064 sitasi

A User's Guide to the Encyclopedia of DNA Elements (ENCODE)

R. Myers J. Stamatoyannopoulos M. Snyder I. Dunham R. Hardison +309 lainnya

Lihat Sumber DOI

Abstrak

The mission of the Encyclopedia of DNA Elements (ENCODE) Project is to enable the scientific and medical communities to interpret the human genome sequence and apply it to understand human biology and improve health. The ENCODE Consortium is integrating multiple technologies and approaches in a collective effort to discover and define the functional elements encoded in the human genome, including genes, transcripts, and transcriptional regulatory regions, together with their attendant chromatin states and DNA methylation patterns. In the process, standards to ensure high-quality data have been implemented, and novel algorithms have been developed to facilitate analysis. Data and derived results are made available through a freely accessible database. Here we provide an overview of the project and the resources it is generating and illustrate the application of ENCODE data to interpret the human genome.

Topik & Kata Kunci

Medicine Biology

Penulis (314)

R. Myers

J. Stamatoyannopoulos

M. Snyder

I. Dunham

R. Hardison

B. Bernstein

T. Gingeras

W. Kent

E. Birney

B. Wold

G. Crawford

C. Epstein

N. Shoresh

J. Ernst

T. Mikkelsen

Pouya Kheradpour

Xiaolan Zhang

Li Wang

Robbyn Issner

Michael J. Coyne

Timothy J. Durham

Manching Ku

Thanh Truong

L. D. Ward

Robert C. Altshuler

Michael F. Lin

Manolis Kellis

Carrie A. Davis

P. Kapranov

A. Dobin

C. Zaleski

F. Schlesinger

P. Batut

S. Chakrabortty

Sonali Jha

Wei Lin

J. Drenkow

Huaien Wang

Kim Bell

I. Bell

Hui Gao

E. Dumais

Jacqueline Dumais

S. Antonarakis

C. Ucla

C. Borel

R. Guigó

S. Djebali

Julien Lagarde

C. Kingswood

Paolo Ribeca

M. Sammeth

T. Alioto

A. Merkel

Hagen U. Tilgner

Piero Carninci

Y. Hayashizaki

T. Lassmann

Hazuki Takahashi

Rehab F Abdelhamid

G. Hannon

Katalin Fejes

Jonathan B. Preall

Assaf Gordon

V. Sotirova

A. Reymond

C. Howald

Emilie Aït Yahya Graison

Jacqueline Chrast

Y. Ruan

Xiaoan Ruan

Atif Shahab

W. Poh

Chia-Lin Wei

T. Furey

A. Boyle

Nathan C. Sheffield

Lingyun Song

Yoichiro Shibata

T. Vales

D. Winter

Zhancheng Zhang

D. London

Tian-yuan Wang

Damian Keefe

V. Iyer

Bum-Kyu Lee

Ryan McDaniell

Zheng Liu

Anna M. Battenhouse

A. Bhinge

J. Lieb

L. Grasfeder

Kimberly A. Showers

P. Giresi

Seul K.C. Kim

Christopher Shestak

Florencia Pauli

Timothy E. Reddy

Jason Gertz

E. Partridge

Preti Jain

Rebekka O. Sprouse

A. Bansal

Barbara N. Pusey

M. Muratet

K. Varley

K. Bowling

Kimberly M. Newberry

Amy S. Nesmith

Jason A. Dilocker

S. Parker

L. Waite

Krista S. Thibeault

Kevin Roberts

D. Absher

A. Mortazavi

B. Williams

G. Marinov

Diane Trout

Brandon King

Kenneth McCue

Anthony Kirilusha

Gilberto Desalvo

Katherine Fisher

Henry Amrhein

S. Pepke

J. Vielmetter

G. Sherlock

A. Sidow

S. Batzoglou

Rami Rauch

Anshul B Kundaje

Maxwell W. Libbrecht

E. Margulies

Stephen C. J. Parker

L. Elnitski

E. Green

T. Hubbard

J. Harrow

S. Searle

F. Kokocinski

B. Aken

A. Frankish

T. Hunt

Gloria Despacio-Reyes

M. Kay

Gaurab Mukherjee

A. Bignell

Gary Saunders

V. Boychenko

M. Brent

M. Baren

Randall H. Brown

M. Gerstein

Ekta Khurana

S. Balasubramanian

Hugo Y. K. Lam

Philip Cayting

R. Robilotto

Z. Lu

T. Derrien

Andrea Tanzer

David G. Knowles

M. Mariotti

D. Haussler

R. Harte

M. Diekhans

A. Valencia

M. Tress

S. Landt

D. Raha

Minyi Shi

G. Euskirchen

Fabian Grubert

Maya M Kasowski

Jin Lian

P. Lacroute

Youhan Xu

Hannah Monahan

Dorrelyn Patacsil

T. Slifer

Xinqiong Yang

Alexandra E. Charos

Brian D. Reed

Linfeng Wu

Raymond K. Auerbach

L. Habegger

M. Hariharan

J. Rozowsky

A. Abyzov

S. Weissman

K. Struhl

Nathan Lamarre-Vincent

Marianne Lindahl-Allen

B. Miotto

Z. Moqtaderi

J. D. Fleming

P. Newburger

P. Farnham

Seth Frietze

H. O’Geen

Xiaoqin Xu

Kimberly R. Blahnik

Alina R. Cao

Sushma Iyengar

R. Kaul

R. Thurman

Hao Wang

P. Navas

R. Sandstrom

P. Sabo

M. Weaver

T. Canfield

Kristen Lee

Shane J. Neph

Vaughan Roach

Alex P. Reynolds

Audra K. Johnson

Eric Rynes

Erika Giste

Shinny Vong

Jun Neri

Tristan Frum

Eric D Nguyen

Abigail K. Ebersol

Minerva E. Sanchez

Hadar H. Sheffer

D. Lotakis

E. Haugen

R. Humbert

T. Kutyavin

Tony Shafer

William Stafford Noble

J. Dekker

B. Lajoie

Amartya Sanyal

K. Rosenbloom

T. Dreszer

B. Raney

G. Barber

L. Meyer

C. A. Sloan

V. Malladi

M. Cline

K. Learned

Vanessa Swing

A. Zweig

B. Rhead

P. Fujita

Krishna M. Roskin

D. Karolchik

R. Kuhn

S. Wilder

D. Sobral

Javier Herrero

Kathryn M Beal

M. Lukk

A. Brazma

Juan M. Vaquerizas

N. Luscombe

P. Bickel

Nathan Boley

James B. Brown

Qunhua Li

Haiyan Huang

A. Sboner

Kevin Y. Yip

Chao Cheng

Koon-Kiu Yan

N. Bhardwaj

Jing Wang

L. Lochovsky

J. Jee

Theodore Gibson

Jing Leng

Jiang Du

Robert S. Harris

Giltae Song

W. Miller

Bernard B. Suh

B. Paten

M. M. Hoffman

Orion J. Buske

Z. Weng

Xianjun Dong

Jie Wang

H. Xi

S. Tenenbaum

F. Doyle

S. Chittur

L. O. Penalva

T. Tullius

K. White

S. Karmakar

Alec Victorsen

Nader Jameel

N. Bild

Robert L. Grossman

P. Collins

N. Trinklein

Morgan C. Giddings

Jainab Khatun

Christopher W. Maier

Ting Wang

T. Whitfield

Xian Chen

Yanbao Yu

H. Gunawardena

E. Feingold

Rebecca F. Lowdon

Laura A. L. Dillon

P. Good

B. Risk

Format Sitasi

APA MLA BibTeX

Myers, R., Stamatoyannopoulos, J., Snyder, M., Dunham, I., Hardison, R., Bernstein, B. et al. (2011). A User's Guide to the Encyclopedia of DNA Elements (ENCODE). https://doi.org/10.1371/journal.pbio.1001046

@article{myers2011, author = {R. Myers and J. Stamatoyannopoulos and M. Snyder and I. Dunham and R. Hardison and B. Bernstein and T. Gingeras and W. Kent and E. Birney and B. Wold and G. Crawford and C. Epstein and N. Shoresh and J. Ernst and T. Mikkelsen and Pouya Kheradpour and Xiaolan Zhang and Li Wang and Robbyn Issner and Michael J. Coyne and Timothy J. Durham and Manching Ku and Thanh Truong and L. D. Ward and Robert C. Altshuler and Michael F. Lin and Manolis Kellis and Carrie A. Davis and P. Kapranov and A. Dobin and C. Zaleski and F. Schlesinger and P. Batut and S. Chakrabortty and Sonali Jha and Wei Lin and J. Drenkow and Huaien Wang and Kim Bell and I. Bell and Hui Gao and E. Dumais and Jacqueline Dumais and S. Antonarakis and C. Ucla and C. Borel and R. Guigó and S. Djebali and Julien Lagarde and C. Kingswood and Paolo Ribeca and M. Sammeth and T. Alioto and A. Merkel and Hagen U. Tilgner and Piero Carninci and Y. Hayashizaki and T. Lassmann and Hazuki Takahashi and Rehab F Abdelhamid and G. Hannon and Katalin Fejes and Jonathan B. Preall and Assaf Gordon and V. Sotirova and A. Reymond and C. Howald and Emilie Aït Yahya Graison and Jacqueline Chrast and Y. Ruan and Xiaoan Ruan and Atif Shahab and W. Poh and Chia-Lin Wei and T. Furey and A. Boyle and Nathan C. Sheffield and Lingyun Song and Yoichiro Shibata and T. Vales and D. Winter and Zhancheng Zhang and D. London and Tian-yuan Wang and Damian Keefe and V. Iyer and Bum-Kyu Lee and Ryan McDaniell and Zheng Liu and Anna M. Battenhouse and A. Bhinge and J. Lieb and L. Grasfeder and Kimberly A. Showers and P. Giresi and Seul K.C. Kim and Christopher Shestak and Florencia Pauli and Timothy E. Reddy and Jason Gertz and E. Partridge and Preti Jain and Rebekka O. Sprouse and A. Bansal and Barbara N. Pusey and M. Muratet and K. Varley and K. Bowling and Kimberly M. Newberry and Amy S. Nesmith and Jason A. Dilocker and S. Parker and L. Waite and Krista S. Thibeault and Kevin Roberts and D. Absher and A. Mortazavi and B. Williams and G. Marinov and Diane Trout and Brandon King and Kenneth McCue and Anthony Kirilusha and Gilberto Desalvo and Katherine Fisher and Henry Amrhein and S. Pepke and J. Vielmetter and G. Sherlock and A. Sidow and S. Batzoglou and Rami Rauch and Anshul B Kundaje and Maxwell W. Libbrecht and E. Margulies and Stephen C. J. Parker and L. Elnitski and E. Green and T. Hubbard and J. Harrow and S. Searle and F. Kokocinski and B. Aken and A. Frankish and T. Hunt and Gloria Despacio-Reyes and M. Kay and Gaurab Mukherjee and A. Bignell and Gary Saunders and V. Boychenko and M. Brent and M. Baren and Randall H. Brown and M. Gerstein and Ekta Khurana and S. Balasubramanian and Hugo Y. K. Lam and Philip Cayting and R. Robilotto and Z. Lu and T. Derrien and Andrea Tanzer and David G. Knowles and M. Mariotti and D. Haussler and R. Harte and M. Diekhans and A. Valencia and M. Tress and S. Landt and D. Raha and Minyi Shi and G. Euskirchen and Fabian Grubert and Maya M Kasowski and Jin Lian and P. Lacroute and Youhan Xu and Hannah Monahan and Dorrelyn Patacsil and T. Slifer and Xinqiong Yang and Alexandra E. Charos and Brian D. Reed and Linfeng Wu and Raymond K. Auerbach and L. Habegger and M. Hariharan and J. Rozowsky and A. Abyzov and S. Weissman and K. Struhl and Nathan Lamarre-Vincent and Marianne Lindahl-Allen and B. Miotto and Z. Moqtaderi and J. D. Fleming and P. Newburger and P. Farnham and Seth Frietze and H. O’Geen and Xiaoqin Xu and Kimberly R. Blahnik and Alina R. Cao and Sushma Iyengar and R. Kaul and R. Thurman and Hao Wang and P. Navas and R. Sandstrom and P. Sabo and M. Weaver and T. Canfield and Kristen Lee and Shane J. Neph and Vaughan Roach and Alex P. Reynolds and Audra K. Johnson and Eric Rynes and Erika Giste and Shinny Vong and Jun Neri and Tristan Frum and Eric D Nguyen and Abigail K. Ebersol and Minerva E. Sanchez and Hadar H. Sheffer and D. Lotakis and E. Haugen and R. Humbert and T. Kutyavin and Tony Shafer and William Stafford Noble and J. Dekker and B. Lajoie and Amartya Sanyal and K. Rosenbloom and T. Dreszer and B. Raney and G. Barber and L. Meyer and C. A. Sloan and V. Malladi and M. Cline and K. Learned and Vanessa Swing and A. Zweig and B. Rhead and P. Fujita and Krishna M. Roskin and D. Karolchik and R. Kuhn and S. Wilder and D. Sobral and Javier Herrero and Kathryn M Beal and M. Lukk and A. Brazma and Juan M. Vaquerizas and N. Luscombe and P. Bickel and Nathan Boley and James B. Brown and Qunhua Li and Haiyan Huang and A. Sboner and Kevin Y. Yip and Chao Cheng and Koon-Kiu Yan and N. Bhardwaj and Jing Wang and L. Lochovsky and J. Jee and Theodore Gibson and Jing Leng and Jiang Du and Robert S. Harris and Giltae Song and W. Miller and Bernard B. Suh and B. Paten and M. M. Hoffman and Orion J. Buske and Z. Weng and Xianjun Dong and Jie Wang and H. Xi and S. Tenenbaum and F. Doyle and S. Chittur and L. O. Penalva and T. Tullius and K. White and S. Karmakar and Alec Victorsen and Nader Jameel and N. Bild and Robert L. Grossman and P. Collins and N. Trinklein and Morgan C. Giddings and Jainab Khatun and Christopher W. Maier and Ting Wang and T. Whitfield and Xian Chen and Yanbao Yu and H. Gunawardena and E. Feingold and Rebecca F. Lowdon and Laura A. L. Dillon and P. Good and B. Risk}, title = {A User's Guide to the Encyclopedia of DNA Elements (ENCODE)}, year = {2011}, journal = {Semantic Scholar}, doi = {10.1371/journal.pbio.1001046}, url = {https://www.semanticscholar.org/paper/eabd2d0b524614fd87fb14e2b4a7a0b87cdd9efb}, }

Akses Cepat

Lihat di Sumber doi.org/10.1371/journal.pbio.1001046

Informasi Jurnal

Tahun Terbit: 2011
Bahasa: en
Total Sitasi: 1064×
Sumber Database: Semantic Scholar
DOI: 10.1371/journal.pbio.1001046
Akses: Open Access ✓