Semantic Scholar Open Access 2009 55785 sitasi

The Sequence Alignment/Map format and SAMtools

Heng Li R. Handsaker Alec Wysoker T. Fennell Jue Ruan +4 lainnya

Lihat Sumber DOI

Abstrak

Summary: The Sequence Alignment/Map (SAM) format is a generic alignment format for storing read alignments against reference sequences, supporting short and long reads (up to 128 Mbp) produced by different sequencing platforms. It is flexible in style, compact in size, efficient in random access and is the format in which alignments from the 1000 Genomes Project are released. SAMtools implements various utilities for post-processing alignments in the SAM format, such as indexing, variant caller and alignment viewer, and thus provides universal tools for processing read alignments. Availability: http://samtools.sourceforge.net Contact: rd@sanger.ac.uk

Topik & Kata Kunci

Computer Science Medicine

Penulis (9)

Heng Li

R. Handsaker

Alec Wysoker

T. Fennell

Jue Ruan

Nils Homer

Gabor T. Marth

G. Abecasis

R. Durbin

Format Sitasi

APA MLA BibTeX

Li, H., Handsaker, R., Wysoker, A., Fennell, T., Ruan, J., Homer, N. et al. (2009). The Sequence Alignment/Map format and SAMtools. https://doi.org/10.1093/bioinformatics/btp352

Akses Cepat

Lihat di Sumber doi.org/10.1093/bioinformatics/btp352

Informasi Jurnal

Tahun Terbit: 2009
Bahasa: en
Total Sitasi: 55785×
Sumber Database: Semantic Scholar
DOI: 10.1093/bioinformatics/btp352
Akses: Open Access ✓