Semantic Scholar Open Access 2021 272 sitasi

A global metagenomic map of urban microbiomes and antimicrobial resistance

D. Danko D. Bezdan Evan E. Afshin Sofia Ahsanuddin Chandrima Bhattacharya +495 lainnya

Lihat Sumber DOI

Abstrak

Summary We present a global atlas of 4,728 metagenomic samples from mass-transit systems in 60 cities over 3 years, representing the first systematic, worldwide catalog of the urban microbial ecosystem. This atlas provides an annotated, geospatial profile of microbial strains, functional characteristics, antimicrobial resistance (AMR) markers, and genetic elements, including 10,928 viruses, 1,302 bacteria, 2 archaea, and 838,532 CRISPR arrays not found in reference databases. We identified 4,246 known species of urban microorganisms and a consistent set of 31 species found in 97% of samples that were distinct from human commensal organisms. Profiles of AMR genes varied widely in type and density across cities. Cities showed distinct microbial taxonomic signatures that were driven by climate and geographic differences. These results constitute a high-resolution global metagenomic atlas that enables discovery of organisms and genes, highlights potential public health and forensic applications, and provides a culture-independent view of AMR burden in cities.

Topik & Kata Kunci

Medicine

Penulis (500)

D. Danko

D. Bezdan

Evan E. Afshin

Sofia Ahsanuddin

Chandrima Bhattacharya

D. Butler

Kern Rei Chng

Daisy Donnellan

J. Hecht

Katelyn Jackson

Katerina Kuchin

Mikhail Karasikov

Abigail Lyons

Lauren Mak

D. Meleshko

Harun Mustafa

B. Mutai

R. Neches

A. Ng

O. Nikolayeva

T. Nikolayeva

E. Png

K. Ryon

Jorge L. Sanchez

H. Shaaban

Maria A. Sierra

Dominique Thomas

B. Young

Omar O. Abudayyeh

Josue Alicea

Malay Bhattacharyya

R. Blekhman

E. Castro-Nallar

Ana M. Cañas

A. Chatziefthimiou

R. Crawford

F. D. Filippis

Youping Deng

C. Desnues

E. Dias-Neto

M. Dybwad

E. Elhaik

D. Ercolini

A. Frolova

Dennis Gankin

J. Gootenberg

A. Graf

D. Green

I. Hajirasouliha

Jaden J. A. Hastings

Mark Hernandez

G. Iraola

Soojin Jang

A. Kahles

F. Kelly

Kaymisha Knights

N. Kyrpides

Paweł P. Łabaj

Patrick K. H. Lee

M. Leung

P. Ljungdahl

G. Mason-Buck

K. McGrath

Cem Meydan

E. Mongodin

M. Moraes

N. Nagarajan

M. Nieto-Caballero

H. Noushmehr

Manuela Oliveira

S. Ossowski

O. Osuolale

Orhan Özcan

David Páez-Espino

N. Rascovan

Hugues Richard

G. Rätsch

L. Schriml

T. Semmler

O. U. Sezerman

Leming Shi

Tieliu Shi

R. Siam

L. Song

Haruo Suzuki

D. Court

S. Tighe

X. Tong

K. Udekwu

J. Ugalde

Brandon Valentine

D. Vassilev

Elena M. Vayndorf

T. Velavan

Jun Wu

M. Zambrano

Jifeng Zhu

Sibo Zhu

C. Mason

Natasha Abdullah

M. Abraão

A. Adel

M. Afaq

Faisal S. Al-Quaddoomi

Ireen Alam

Gabriela E. Albuquerque

A. Alexiev

K. Ali

L. E. Alvarado-Arnez

S. Aly

Jennifer Amachee

Maria G. Amorim

Majelia Ampadu

M. Amran

Na An

W. Andrew

H. Andrianjakarivony

M. Angelov

Verónica Antelo

Catharine Aquino

Álvaro Aranguren

L. F. Araujo

Hitler Francois Vasquez Arevalo

Jenny Arevalo

Carme Arnan

L. E. Arnez

Fernanda Arredondo

M. Arthur

Freddy Asenjo

T. Aung

J. Auvinet

Núria Aventín

Sadaf Ayaz

Silva Baburyan

Abd-Manaaf Bakere

Katrin Bakhl

T. Bartelli

E. Batdelger

François Baudon

K. Becher

Carla Bello

Médine Benchouaia

H. Benisty

Anne-Sophie Benoiston

J. Benson

D. Benítez

J. Bernardes

D. Bertrand

Silvia Beurmann

Tristan Bitard-Feildel

L. Bittner

C. Black

G. Blanc

Brittany Blyther

T. Bode

Julia Boeri

B. Boldgiv

Kevin Bolzli

A. Bordigoni

Ciro Borrelli

S. Bouchard

J. Bouly

Alicia A. Boyd

G. Branco

A. Breschi

B. Brindefalk

Christian Brion

A. Briones

Paulina Buczansla

Catherine M. Burke

A. Burrell

A. Butova

Irvind Buttar

Jalia Bynoe

Sven Bönigk

K. O. Bøifot

Hiram Caballero

Xiaoyan Cai

Dayana Calderón

Angela Cantillo

M. Carbajo

A. Carbone

A. Cárdenas

Katerine Carrillo

Laurie Casalot

S. Castro

A. Castro

Astred E. Castro

A. Castro

S. Cawthorne

J. Cedillo

S. Chaker

Jasna Chalangal

Allison Chan

A. Chasapi

Starr Chatziefthimiou

S. Chaudhuri

A. Chavan

F. Chavez

Gregory Chem

Xiaoqing Chen

Michelle Chen

Jenn-Wei Chen

A. Chernomoretz

Allaeddine Chettouh

Daisy Cheung

Diana Chicas

S. Chiu

Hira Choudhry

Carl Chrispin

Kianna Ciaramella

E. Cifuentes

Jake Cohen

D. Coil

S. Collin

C. Conger

Romain Conte

Flavia Corsi

Cecilia Cossio

A. Costa

Delisia Cuebas

B. D’Alessandro

K. Dahlhausen

A. Darling

P. Das

Lucinda Davenport

Laurent David

Natalie R. Davidson

Gargi Dayama

Stéphane Delmas

Chris K. Deng

C. Dequeker

Alexandre Désert

M. Devi

F. Dezem

Clara N. Dias

T. Donahoe

S. Dorado

L. Dorsey

Valeriia Dotsenko

S. Du

Alexandra Dutan

N. Eady

J. Eisen

Miar Elaskandrany

Lennard Epping

J. P. Escalera-Antezana

C. Ettinger

Iqra Faiz

Luice Fan

N. Farhat

E. Faure

Fazlina Fauzi

C. Feigin

S. Felice

Laís Pereira Ferreira

Gabriel E. Figueroa

Aubin Fleiss

D. Flores

J. L. V. Flores

M. A. Fonseca

J. Foox

J. C. Forero

Aaishah Francis

Kelly French

P. Fresia

Jacob Friedman

J. Fuentes

Josephine Galipon

Mathilde Garcia

Laura García

C. García

A. Geiger

Samuel M. Gerner

S. Ghose

Dao Phuong Giang

M. Giménez

D. Giovannelli

D. Githae

Spyridon Gkotzis

L. Godoy

Samantha L Goldman

G. Gonnet

J. González

Andrea González

Camila Gonzalez-Poblete

Andrew Gray

T. Ryan Gregory

Charlotte Greselle

S. Guasco

J. Guerra

N. Gurianova

Wolfgang Haehr

S. Halary

Felix Hartkopf

Arya Hawkins-Zafarnia

Nur Hazlin Hazrin-Chong

Eric J. N. Helfrich

É. Hell

Tamera Henry

Samuel Hernandez

P. Hernández

D. Hess-Homeier

L. Hittle

Nghiem Xuan Hoan

A. Holik

C. Homma

I. Hoxie

Michaela Huber

E. Humphries

Stephanie L. Hyland

A. Hässig

R. Häusler

Nathalie Hüsser

R. Petit

Badamnyambuu Iderzorig

Mizuki Igarashi

S. Iqbal

S. Ishikawa

Sakura Ishizuka

S. Islam

Riham Islam

Kohei Ito

Sota Ito

Takayuki Ito

T. Ivankovic

Tomoki Iwashiro

Sarah Jackson

Joanne Jacobs

Marisano James

M. Jaubert

Marie-Laure Jerier

Esmeralda Jiminez

Ayantu Jinfessa

Ymke de Jong

Hyun-Woo Joo

Guilllaume Jospin

T. Kajita

Affifah Saadah Ahmad Kassim

Naoyuki Kato

Amritveer Kaur

Inderjit N. Kaur

F. Kehdy

V. Khadka

S. Khan

M. Khavari

Michelle Ki

Gina Kim

H. J. Kim

Sangwan Kim

R. J. King

Giuseppe KoLoMonaco

Ellen Koag

Nadezhda Kobko-Litskevitch

Maryna Korshevniuk

Michael Kozhar

Jonas Krebs

Nanami Kubota

A. Kuklin

Sheelta S. Kumar

Rachel Kwong

L. Kwong

I. Lafontaine

J. Lago

T. Lai

É. Laine

Manolo Laiola

Olha Lakhneko

Ishan Lamba

Gerardo de Lamotte

Romain Lannes

E. Lazzari

M. Leahy

Hyunjun Lee

Yunmi Lee

L.H. Lee

V. Lemaire

Emily Leong

D. Lewandowska

Chenhao Li

Weijun Liang

M. Lin

Priscilla Lisboa

Anna Litskevitch

E. Liu

T. Liu

Mayra Arauco Livia

Y. Lo

Sonia Losim

Manon Loubens

Jennifer Lu

Olexandr Lykhenko

S. Lysakova

S. Mahmoud

S. A. Majid

Natalka Makogon

D. Maldonado

Krizzy Mallari

T. Malta

M. Mamun

Dimitri Manoir

Germán Marchandon

Natalia Marciniak

Sonia Marinovic

B. Marques

N. Mathews

Yuri Matsuzaki

V. Matthys

M. May

E. McComb

A. Meagher

A. Melamed

W. Menary

Katterinne N Mendez

Argenis Mendez

Irène Mauricette Mendy

Irene Meng

Ajay Menon

Mark Menor

Roy Meoded

Nancy Merino

Karishma Miah

M. Mignotte

Tanja Miketic

Wilson Miranda

Athena Mitsios

Ryu Miura

Kunihiko Miyake

M. D. Moccia

Natasha Mohan

M. Mohsin

Karobi Moitra

Mauricio Moldes

Laura M. Molina

Jennifer Molinet

Orgil-Erdene Molomjamts

Eftar Moniruzzaman

Soo-Kyeong Moon

I. D. Moraes

M. Moreno

M. Mosella

J. Moser

C. Mozsary

Amanda Muehlbauer

Oasima Muner

Muntaha Munia

Naimah Munim

Maureen Muscat

Tatjana Mustac

C. Muñoz

F. Nadalin

Areeg Naeem

Dorottya Nagy‐Szakal

M. Nakagawa

Ashanti Narce

Masaki Nasu

I. Navarrete

Hiba Naveed

Bryan Nazario

N. Nedunuri

Thomas Neff

Aida Nesimi

W. C. Ng

S. Ng

Gloria Nguyen

Elsy M. Ngwa

Agier Nicolas

P. Nicolas

Abdollahi Nika

Hosna Noorzi

A. Nosrati

D. Nunes

Kathryn O’Brien

Niamh B. O’Hara

Gabriella Oken

R. Olawoyin

Javier Quilez Oliete

Kiara Olmeda

Tolulope Oluwadare

I. A. Oluwadare

Nils Ordioni

Jenessa Orpilla

Jacqueline Orrego

M. Ortega

Princess Osma

Israel O. Osuolale

Oluwatosin M. Osuolale

M. Ota

F. Oteri

Yuya Oto

R. Ounit

C. Ouzounis

Subhamitra Pakrashi

Rachel Paras

C. Pardo-Esté

Young-Ja Park

Paulina Pastuszek

Suraj Patel

J. Pathmanathan

A. Patrignani

Format Sitasi

APA MLA BibTeX

Danko, D., Bezdan, D., Afshin, E.E., Ahsanuddin, S., Bhattacharya, C., Butler, D. et al. (2021). A global metagenomic map of urban microbiomes and antimicrobial resistance. https://doi.org/10.1016/j.cell.2021.05.002

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Kyrpides and Paweł P. Łabaj and Patrick K. H. Lee and M. Leung and P. Ljungdahl and G. Mason-Buck and K. McGrath and Cem Meydan and E. Mongodin and M. Moraes and N. Nagarajan and M. Nieto-Caballero and H. Noushmehr and Manuela Oliveira and S. Ossowski and O. Osuolale and Orhan Özcan and David Páez-Espino and N. Rascovan and Hugues Richard and G. Rätsch and L. Schriml and T. Semmler and O. U. Sezerman and Leming Shi and Tieliu Shi and R. Siam and L. Song and Haruo Suzuki and D. Court and S. Tighe and X. Tong and K. Udekwu and J. Ugalde and Brandon Valentine and D. Vassilev and Elena M. Vayndorf and T. Velavan and Jun Wu and M. Zambrano and Jifeng Zhu and Sibo Zhu and C. Mason and Natasha Abdullah and M. Abraão and A. Adel and M. Afaq and Faisal S. Al-Quaddoomi and Ireen Alam and Gabriela E. Albuquerque and A. Alexiev and K. Ali and L. E. Alvarado-Arnez and S. Aly and Jennifer Amachee and Maria G. Amorim and Majelia Ampadu and M. Amran and Na An and W. Andrew and H. Andrianjakarivony and M. Angelov and Verónica Antelo and Catharine Aquino and Álvaro Aranguren and L. F. Araujo and Hitler Francois Vasquez Arevalo and Jenny Arevalo and Carme Arnan and L. E. Arnez and Fernanda Arredondo and M. Arthur and Freddy Asenjo and T. Aung and J. Auvinet and Núria Aventín and Sadaf Ayaz and Silva Baburyan and Abd-Manaaf Bakere and Katrin Bakhl and T. Bartelli and E. Batdelger and François Baudon and K. Becher and Carla Bello and Médine Benchouaia and H. Benisty and Anne-Sophie Benoiston and J. Benson and D. Benítez and J. Bernardes and D. Bertrand and Silvia Beurmann and Tristan Bitard-Feildel and L. Bittner and C. Black and G. Blanc and Brittany Blyther and T. Bode and Julia Boeri and B. Boldgiv and Kevin Bolzli and A. Bordigoni and Ciro Borrelli and S. Bouchard and J. Bouly and Alicia A. Boyd and G. Branco and A. Breschi and B. Brindefalk and Christian Brion and A. Briones and Paulina Buczansla and Catherine M. Burke and A. Burrell and A. Butova and Irvind Buttar and Jalia Bynoe and Sven Bönigk and K. O. Bøifot and Hiram Caballero and Xiaoyan Cai and Dayana Calderón and Angela Cantillo and M. Carbajo and A. Carbone and A. Cárdenas and Katerine Carrillo and Laurie Casalot and S. Castro and A. Castro and Astred E. Castro and A. Castro and S. Cawthorne and J. Cedillo and S. Chaker and Jasna Chalangal and Allison Chan and A. Chasapi and Starr Chatziefthimiou and S. Chaudhuri and A. Chavan and F. Chavez and Gregory Chem and Xiaoqing Chen and Michelle Chen and Jenn-Wei Chen and A. Chernomoretz and Allaeddine Chettouh and Daisy Cheung and Diana Chicas and S. Chiu and Hira Choudhry and Carl Chrispin and Kianna Ciaramella and E. Cifuentes and Jake Cohen and D. Coil and S. Collin and C. Conger and Romain Conte and Flavia Corsi and Cecilia Cossio and A. Costa and Delisia Cuebas and B. D’Alessandro and K. Dahlhausen and A. Darling and P. Das and Lucinda Davenport and Laurent David and Natalie R. Davidson and Gargi Dayama and Stéphane Delmas and Chris K. Deng and C. Dequeker and Alexandre Désert and M. Devi and F. Dezem and Clara N. Dias and T. Donahoe and S. Dorado and L. Dorsey and Valeriia Dotsenko and S. Du and Alexandra Dutan and N. Eady and J. Eisen and Miar Elaskandrany and Lennard Epping and J. P. Escalera-Antezana and C. Ettinger and Iqra Faiz and Luice Fan and N. Farhat and E. Faure and Fazlina Fauzi and C. Feigin and S. Felice and Laís Pereira Ferreira and Gabriel E. Figueroa and Aubin Fleiss and D. Flores and J. L. V. Flores and M. A. Fonseca and J. Foox and J. C. Forero and Aaishah Francis and Kelly French and P. Fresia and Jacob Friedman and J. Fuentes and Josephine Galipon and Mathilde Garcia and Laura García and C. García and A. Geiger and Samuel M. Gerner and S. Ghose and Dao Phuong Giang and M. Giménez and D. Giovannelli and D. Githae and Spyridon Gkotzis and L. Godoy and Samantha L Goldman and G. Gonnet and J. González and Andrea González and Camila Gonzalez-Poblete and Andrew Gray and T. Ryan Gregory and Charlotte Greselle and S. Guasco and J. Guerra and N. Gurianova and Wolfgang Haehr and S. Halary and Felix Hartkopf and Arya Hawkins-Zafarnia and Nur Hazlin Hazrin-Chong and Eric J. N. Helfrich and É. Hell and Tamera Henry and Samuel Hernandez and P. Hernández and D. Hess-Homeier and L. Hittle and Nghiem Xuan Hoan and A. Holik and C. Homma and I. Hoxie and Michaela Huber and E. Humphries and Stephanie L. Hyland and A. Hässig and R. Häusler and Nathalie Hüsser and R. Petit and Badamnyambuu Iderzorig and Mizuki Igarashi and S. Iqbal and S. Ishikawa and Sakura Ishizuka and S. Islam and Riham Islam and Kohei Ito and Sota Ito and Takayuki Ito and T. Ivankovic and Tomoki Iwashiro and Sarah Jackson and Joanne Jacobs and Marisano James and M. Jaubert and Marie-Laure Jerier and Esmeralda Jiminez and Ayantu Jinfessa and Ymke de Jong and Hyun-Woo Joo and Guilllaume Jospin and T. Kajita and Affifah Saadah Ahmad Kassim and Naoyuki Kato and Amritveer Kaur and Inderjit N. Kaur and F. Kehdy and V. Khadka and S. Khan and M. Khavari and Michelle Ki and Gina Kim and H. J. Kim and Sangwan Kim and R. J. King and Giuseppe KoLoMonaco and Ellen Koag and Nadezhda Kobko-Litskevitch and Maryna Korshevniuk and Michael Kozhar and Jonas Krebs and Nanami Kubota and A. Kuklin and Sheelta S. Kumar and Rachel Kwong and L. Kwong and I. Lafontaine and J. Lago and T. Lai and É. Laine and Manolo Laiola and Olha Lakhneko and Ishan Lamba and Gerardo de Lamotte and Romain Lannes and E. Lazzari and M. Leahy and Hyunjun Lee and Yunmi Lee and L.H. Lee and V. Lemaire and Emily Leong and D. Lewandowska and Chenhao Li and Weijun Liang and M. Lin and Priscilla Lisboa and Anna Litskevitch and E. Liu and T. Liu and Mayra Arauco Livia and Y. Lo and Sonia Losim and Manon Loubens and Jennifer Lu and Olexandr Lykhenko and S. Lysakova and S. Mahmoud and S. A. Majid and Natalka Makogon and D. Maldonado and Krizzy Mallari and T. Malta and M. Mamun and Dimitri Manoir and Germán Marchandon and Natalia Marciniak and Sonia Marinovic and B. Marques and N. Mathews and Yuri Matsuzaki and V. Matthys and M. May and E. McComb and A. Meagher and A. Melamed and W. Menary and Katterinne N Mendez and Argenis Mendez and Irène Mauricette Mendy and Irene Meng and Ajay Menon and Mark Menor and Roy Meoded and Nancy Merino and Karishma Miah and M. Mignotte and Tanja Miketic and Wilson Miranda and Athena Mitsios and Ryu Miura and Kunihiko Miyake and M. D. Moccia and Natasha Mohan and M. Mohsin and Karobi Moitra and Mauricio Moldes and Laura M. Molina and Jennifer Molinet and Orgil-Erdene Molomjamts and Eftar Moniruzzaman and Soo-Kyeong Moon and I. D. Moraes and M. Moreno and M. Mosella and J. Moser and C. Mozsary and Amanda Muehlbauer and Oasima Muner and Muntaha Munia and Naimah Munim and Maureen Muscat and Tatjana Mustac and C. Muñoz and F. Nadalin and Areeg Naeem and Dorottya Nagy‐Szakal and M. Nakagawa and Ashanti Narce and Masaki Nasu and I. Navarrete and Hiba Naveed and Bryan Nazario and N. Nedunuri and Thomas Neff and Aida Nesimi and W. C. Ng and S. Ng and Gloria Nguyen and Elsy M. Ngwa and Agier Nicolas and P. Nicolas and Abdollahi Nika and Hosna Noorzi and A. Nosrati and D. Nunes and Kathryn O’Brien and Niamh B. O’Hara and Gabriella Oken and R. Olawoyin and Javier Quilez Oliete and Kiara Olmeda and Tolulope Oluwadare and I. A. Oluwadare and Nils Ordioni and Jenessa Orpilla and Jacqueline Orrego and M. Ortega and Princess Osma and Israel O. Osuolale and Oluwatosin M. Osuolale and M. Ota and F. Oteri and Yuya Oto and R. Ounit and C. Ouzounis and Subhamitra Pakrashi and Rachel Paras and C. Pardo-Esté and Young-Ja Park and Paulina Pastuszek and Suraj Patel and J. Pathmanathan and A. Patrignani}, title = {A global metagenomic map of urban microbiomes and antimicrobial resistance}, year = {2021}, journal = {Semantic Scholar}, doi = {10.1016/j.cell.2021.05.002}, url = {https://www.semanticscholar.org/paper/6efc82a93576dbb6fd3e9601989bbe7c3f33be22}, }

Akses Cepat

Lihat di Sumber doi.org/10.1016/j.cell.2021.05.002

Informasi Jurnal

Tahun Terbit: 2021
Bahasa: en
Total Sitasi: 272×
Sumber Database: Semantic Scholar
DOI: 10.1016/j.cell.2021.05.002
Akses: Open Access ✓