Semantic Scholar Open Access 2020 702 sitasi

A genomic catalog of Earth’s microbiomes

Stephen Nayfach S. Roux Rekha Seshadri D. Udwary N. Varghese +263 lainnya

Lihat Sumber DOI

Abstrak

The reconstruction of bacterial and archaeal genomes from shotgun metagenomes has enabled insights into the ecology and evolution of environmental and host-associated microbiomes. Here we applied this approach to >10,000 metagenomes collected from diverse habitats covering all of Earth’s continents and oceans, including metagenomes from human and animal hosts, engineered environments, and natural and agricultural soils, to capture extant microbial, metabolic and functional potential. This comprehensive catalog includes 52,515 metagenome-assembled genomes representing 12,556 novel candidate species-level operational taxonomic units spanning 135 phyla. The catalog expands the known phylogenetic diversity of bacteria and archaea by 44% and is broadly available for streamlined comparative analyses, interactive exploration, metabolic modeling and bulk download. We demonstrate the utility of this collection for understanding secondary-metabolite biosynthetic potential and for resolving thousands of new host linkages to uncultivated viruses. This resource underscores the value of genome-centric approaches for revealing genomic properties of uncultivated microorganisms that affect ecosystem processes. Cataloging microbial genomes from Earth’s environments expands the known phylogenetic diversity of bacteria and archaea.

Topik & Kata Kunci

Medicine Biology

Penulis (268)

Stephen Nayfach

S. Roux

Rekha Seshadri

D. Udwary

N. Varghese

Frederik Schulz

Dongying Wu

David Páez-Espino

I. Chen

Marcel Huntemann

Krishna Palaniappan

J. Ladau

Supratim Mukherjee

T. Reddy

T. Nielsen

Edward Kirton

José P. Faria

Janaka N. Edirisinghe

Christopher S. Henry

S. Jungbluth

D. Chivian

Paramvir S. Dehal

E. Wood-Charlson

A. Arkin

S. Tringe

A. Visel

Helena Silvia G. Eric Michelle A. Lauren V. Gary Alexandr Abreu Acinas Allen Allen Alteio Andersen Anesio At

Helena Abreu

S. Acinas

E. Allen

M. Allen

Lauren V. Alteio

G. Andersen

A. Anesio

G. Attwood

Viridiana Avila-Magaña

Yacine Badis

J. Bailey

B. Baker

P. Baldrian

H. Barton

D. Beck

Eric D. Becraft

H. Beller

J. Beman

R. Bernier-Latmani

T. Berry

Anthony D. Bertagnolli

S. Bertilsson

Jennifer M. Bhatnagar

J. Bird

Jeffrey L. Blanchard

Sara E. Blumer-Schuette

B. Bohannan

M. Borton

Allyson Brady

S. Brawley

J. Brodie

Steven Brown

Jennifer R. Brum

A. Brune

D. Bryant

A. Buchan

D. Buckley

J. Buongiorno

H. Cadillo-Quiroz

S. Caffrey

A. Campbell

B. Campbell

S. Carr

J. Carroll

S. Cary

A. Cates

R. Cattolico

R. Cavicchioli

L. Chistoserdova

Maureen L. Coleman

P. Constant

Jonathan M. Conway

W. M. Mac Cormack

S. Crowe

B. Crump

C. Currie

R. Daly

K. DeAngelis

Vincent J. Denef

S. Denman

A. Desta

H. Dionisi

J. Dodsworth

Nina Dombrowski

Timothy Donohue

Mark Dopson

Timothy P. Driscoll

P. Dunfield

C. Dupont

Katherine A. Dynarski

V. Edgcomb

E. Edwards

M. Elshahed

Israel Figueroa

Beverly E. Flood

Nathaniel W. Fortney

Caroline S. Fortunato

C. Francis

C. Gachon

S. Garcia

M. C. Gazitúa

T. Gentry

L. Gerwick

Javad Gharechahi

P. Girguis

J. Gladden

M. Gradoville

S. Grasby

Kelly Gravuer

C. Grettenberger

R. Gruninger

Jiarong Guo

M. Habteselassie

S. Hallam

R. Hatzenpichler

B. Hausmann

T. Hazen

B. Hedlund

C. Henny

L. Herfort

M. Hernández

O. Hershey

M. Hess

E. Hollister

L. Hug

D. Hunt

J. Jansson

J. Jarett

V. Kadnikov

Charlene Kelly

R. Kelly

W. Kelly

C. Kerfeld

Jefferey A Kimbrel

J. Klassen

K. Konstantinidis

Laura L. Lee

Wenjun Li

Andrew J. Loder

A. Loy

M. Lozada

B. MacGregor

C. Magnabosco

Aline Maria da Silva

R. McKay

K. McMahon

C. McSweeney

Mónica Medina

Laura K. Meredith

Jessica E. Mizzi

T. Mock

L. Momper

M. Moran

C. Morgan-Lang

D. Moser

G. Muyzer

D. Myrold

Maisie Nash

C. Nesbø

A. Neumann

R. Neumann

D. Noguera

T. Northen

J. Norton

Brent Nowinski

K. Nüsslein

M. O’Malley

R. Oliveira

Valéria Maia de Oliveira

T. Onstott

J. Osvatic

Ouyang Yang

M. Pachiadaki

J. Parnell

L. Partida-Martínez

K. Peay

D. Pelletier

Xuefeng Peng

M. Pester

J. Pett‐Ridge

Sari Peura

Petra Pjevac

Alvaro M. Plominsky

Anja Poehlein

P. Pope

N. Ravin

M. Redmond

Rebecca A. Reiss

V. Rich

Christian Rinke

J. L. M. Rodrigues

W. Rodríguez-Reillo

K. Rossmassler

Joshua D. Sackett

G. Salekdeh

Scott Saleska

M. Scarborough

D. Schachtman

C. Schadt

M. Schrenk

A. Sczyrba

A. Sengupta

J. Setubal

A. Shade

Christine Sharp

D. Sherman

O. Shubenkova

I. N. Sierra-Garcia

R. Simister

H. Simon

S. Sjöling

J. Slonczewski

Rafael Soares Correa de Souza

J. Spear

J. Stegen

R. Stepanauskas

F. Stewart

G. Suen

M. Sullivan

D. Sumner

B. Swan

W. Swingley

J. Tarn

G. Taylor

H. Teeling

M. Tekere

A. Teske

T. Thomas

C. Thrash

J. Tiedje

C. Ting

B. Tully

G. Tyson

Osvlado Ulloa

D. Valentine

Marc Warwick Van Goethem

J. VanderGheynst

T. Verbeke

John Vollmers

A. Vuillemin

N. Waldo

David A. Walsh

B. Weimer

T. Whitman

P. van der Wielen

M. Wilkins

Timothy J. Williams

B. Woodcroft

Jamie Woolet

K. Wrighton

Jun Ye

E. Young

N. Youssef

F. Yu

T. Zemskaya

R. Ziels

T. Woyke

N. Mouncey

Natalia N. Ivanova

N. Kyrpides

Emily Eloe-Fadrosh

Format Sitasi

APA MLA BibTeX

Nayfach, S., Roux, S., Seshadri, R., Udwary, D., Varghese, N., Schulz, F. et al. (2020). A genomic catalog of Earth’s microbiomes. https://doi.org/10.1038/s41587-020-0718-6

@article{nayfach2020, author = {Stephen Nayfach and S. Roux and Rekha Seshadri and D. Udwary and N. Varghese and Frederik Schulz and Dongying Wu and David Páez-Espino and I. Chen and Marcel Huntemann and Krishna Palaniappan and J. Ladau and Supratim Mukherjee and T. Reddy and T. Nielsen and Edward Kirton and José P. Faria and Janaka N. Edirisinghe and Christopher S. Henry and S. Jungbluth and D. Chivian and Paramvir S. Dehal and E. Wood-Charlson and A. Arkin and S. Tringe and A. Visel and Helena Silvia G. Eric Michelle A. Lauren V. Gary Alexandr Abreu Acinas Allen Allen Alteio Andersen Anesio At and Helena Abreu and S. Acinas and E. Allen and M. Allen and Lauren V. Alteio and G. Andersen and A. Anesio and G. Attwood and Viridiana Avila-Magaña and Yacine Badis and J. Bailey and B. Baker and P. Baldrian and H. Barton and D. Beck and Eric D. Becraft and H. Beller and J. Beman and R. Bernier-Latmani and T. Berry and Anthony D. Bertagnolli and S. Bertilsson and Jennifer M. Bhatnagar and J. Bird and Jeffrey L. Blanchard and Sara E. Blumer-Schuette and B. Bohannan and M. Borton and Allyson Brady and S. Brawley and J. Brodie and Steven Brown and Jennifer R. Brum and A. Brune and D. Bryant and A. Buchan and D. Buckley and J. Buongiorno and H. Cadillo-Quiroz and S. Caffrey and A. Campbell and B. Campbell and S. Carr and J. Carroll and S. Cary and A. Cates and R. Cattolico and R. Cavicchioli and L. Chistoserdova and Maureen L. Coleman and P. Constant and Jonathan M. Conway and W. M. Mac Cormack and S. Crowe and B. Crump and C. Currie and R. Daly and K. DeAngelis and Vincent J. Denef and S. Denman and A. Desta and H. Dionisi and J. Dodsworth and Nina Dombrowski and Timothy Donohue and Mark Dopson and Timothy P. Driscoll and P. Dunfield and C. Dupont and Katherine A. Dynarski and V. Edgcomb and E. Edwards and M. Elshahed and Israel Figueroa and Beverly E. Flood and Nathaniel W. Fortney and Caroline S. Fortunato and C. Francis and C. Gachon and S. Garcia and M. C. Gazitúa and T. Gentry and L. Gerwick and Javad Gharechahi and P. Girguis and J. Gladden and M. Gradoville and S. Grasby and Kelly Gravuer and C. Grettenberger and R. Gruninger and Jiarong Guo and M. Habteselassie and S. Hallam and R. Hatzenpichler and B. Hausmann and T. Hazen and B. Hedlund and C. Henny and L. Herfort and M. Hernández and O. Hershey and M. Hess and E. Hollister and L. Hug and D. Hunt and J. Jansson and J. Jarett and V. Kadnikov and Charlene Kelly and R. Kelly and W. Kelly and C. Kerfeld and Jefferey A Kimbrel and J. Klassen and K. Konstantinidis and Laura L. Lee and Wenjun Li and Andrew J. Loder and A. Loy and M. Lozada and B. MacGregor and C. Magnabosco and Aline Maria da Silva and R. McKay and K. McMahon and C. McSweeney and Mónica Medina and Laura K. Meredith and Jessica E. Mizzi and T. Mock and L. Momper and M. Moran and C. Morgan-Lang and D. Moser and G. Muyzer and D. Myrold and Maisie Nash and C. Nesbø and A. Neumann and R. Neumann and D. Noguera and T. Northen and J. Norton and Brent Nowinski and K. Nüsslein and M. O’Malley and R. Oliveira and Valéria Maia de Oliveira and T. Onstott and J. Osvatic and Ouyang Yang and M. Pachiadaki and J. Parnell and L. Partida-Martínez and K. Peay and D. Pelletier and Xuefeng Peng and M. Pester and J. Pett‐Ridge and Sari Peura and Petra Pjevac and Alvaro M. Plominsky and Anja Poehlein and P. Pope and N. Ravin and M. Redmond and Rebecca A. Reiss and V. Rich and Christian Rinke and J. L. M. Rodrigues and W. Rodríguez-Reillo and K. Rossmassler and Joshua D. Sackett and G. Salekdeh and Scott Saleska and M. Scarborough and D. Schachtman and C. Schadt and M. Schrenk and A. Sczyrba and A. Sengupta and J. Setubal and A. Shade and Christine Sharp and D. Sherman and O. Shubenkova and I. N. Sierra-Garcia and R. Simister and H. Simon and S. Sjöling and J. Slonczewski and Rafael Soares Correa de Souza and J. Spear and J. Stegen and R. Stepanauskas and F. Stewart and G. Suen and M. Sullivan and D. Sumner and B. Swan and W. Swingley and J. Tarn and G. Taylor and H. Teeling and M. Tekere and A. Teske and T. Thomas and C. Thrash and J. Tiedje and C. Ting and B. Tully and G. Tyson and Osvlado Ulloa and D. Valentine and Marc Warwick Van Goethem and J. VanderGheynst and T. Verbeke and John Vollmers and A. Vuillemin and N. Waldo and David A. Walsh and B. Weimer and T. Whitman and P. van der Wielen and M. Wilkins and Timothy J. Williams and B. Woodcroft and Jamie Woolet and K. Wrighton and Jun Ye and E. Young and N. Youssef and F. Yu and T. Zemskaya and R. Ziels and T. Woyke and N. Mouncey and Natalia N. Ivanova and N. Kyrpides and Emily Eloe-Fadrosh}, title = {A genomic catalog of Earth’s microbiomes}, year = {2020}, journal = {Semantic Scholar}, doi = {10.1038/s41587-020-0718-6}, url = {https://www.semanticscholar.org/paper/5f38a4f91221e74116c8e4bc0a10d14f3fff5ac0}, }

Akses Cepat

Lihat di Sumber doi.org/10.1038/s41587-020-0718-6

Informasi Jurnal

Tahun Terbit: 2020
Bahasa: en
Total Sitasi: 702×
Sumber Database: Semantic Scholar
DOI: 10.1038/s41587-020-0718-6
Akses: Open Access ✓