Semantic Scholar Open Access 2018 1173 sitasi

QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

Evan Bolyen J. Rideout Matthew R. Dillon Nicholas A. Bokulich C. Abnet +115 lainnya

Lihat Sumber DOI

Abstrak

We present QIIME 2, an open-source microbiome data science platform accessible to users spanning the microbiome research ecosystem, from scientists and engineers to clinicians and policy makers. QIIME 2 provides new features that will drive the next generation of microbiome research. These include interactive spatial and temporal analysis and visualization tools, support for metabolomics and shotgun metagenomics analysis, and automated data provenance tracking to ensure reproducible, transparent microbiome data science.

Topik & Kata Kunci

Computer Science

Penulis (120)

Evan Bolyen

J. Rideout

Matthew R. Dillon

Nicholas A. Bokulich

C. Abnet

Gabriel A. Al-Ghalith

Harriet Alexander

E. Alm

Manimozhiyan Arumugam

F. Asnicar

Yang Bai

J. Bisanz

K. Bittinger

A. Brejnrod

Colin J. Brislawn

C. Brown

B. Callahan

A. Caraballo-Rodríguez

John Chase

Emily K. Cope

R. R. Silva

P. Dorrestein

G. Douglas

D. Durall

C. Duvallet

C. Edwardson

Madeleine Ernst

M. Estaki

Jennifer T. Fouquier

J. Gauglitz

D. Gibson

Antonio Gonzalez

Kestrel Gorlick

Jiarong Guo

Benjamin M Hillmann

S. Holmes

H. Holste

C. Huttenhower

G. Huttley

Stefan Janssen

A. Jarmusch

Lingjing Jiang

Benjamin D. Kaehler

K. Kang

Christopher R. Keefe

P. Keim

S. Kelley

D. Knights

I. Koester

T. Kosciólek

Jorden Kreps

M. Langille

Joslynn S. Lee

R. Ley

Yong-xin Liu

E. Loftfield

C. Lozupone

Massoud Maher

C. Marotz

Bryan D. Martin

Daniel McDonald

L. McIver

A. Melnik

J. Metcalf

S. C. Morgan

James T. Morton

Ahmad Turan Naimey

Jose A Navas-Molina

Louis-Félix Nothias

Stephanie B. Orchanian

Talima R. Pearson

Samuel L. Peoples

D. Petráš

M. Preuss

Elmar Pruesse

Lasse Buur Rasmussen

A. Rivers

Ii Michael S Robeson

P. Rosenthal

N. Segata

Michael Shaffer

A. Shiffer

R. Sinha

Se Jin Song

J. Spear

Austin D. Swafford

Luke R. Thompson

P. Torres

Pauline Trinh

A. Tripathi

P. Turnbaugh

Sabah Ul-Hasan

J. J. Hooft

Fernando Vargas

Y. Vázquez-Baeza

E. Vogtmann

Max von Hippel

William Walters

Yunhu Wan

Mingxun Wang

Jonathan Warren

Kyle C. Weber

Chase Williamson

A. Willis

Z. Xu

Jesse R. Zaneveld

Yilong Zhang

R. Knight

J. Caporaso

Format Sitasi

APA MLA BibTeX

Bolyen, E., Rideout, J., Dillon, M.R., Bokulich, N.A., Abnet, C., Al-Ghalith, G.A. et al. (2018). QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science. https://doi.org/10.7287/PEERJ.PREPRINTS.27295V1

@article{bolyen2018, author = {Evan Bolyen and J. Rideout and Matthew R. Dillon and Nicholas A. Bokulich and C. Abnet and Gabriel A. Al-Ghalith and Harriet Alexander and Harriet Alexander and E. Alm and Manimozhiyan Arumugam and F. Asnicar and Yang Bai and J. Bisanz and K. Bittinger and A. Brejnrod and Colin J. Brislawn and C. Brown and B. Callahan and A. Caraballo-Rodríguez and John Chase and Emily K. Cope and R. R. Silva and P. Dorrestein and G. Douglas and D. Durall and C. Duvallet and C. Edwardson and Madeleine Ernst and M. Estaki and Jennifer T. Fouquier and J. Gauglitz and D. Gibson and Antonio Gonzalez and Kestrel Gorlick and Jiarong Guo and Benjamin M Hillmann and S. Holmes and H. Holste and C. Huttenhower and C. Huttenhower and G. Huttley and Stefan Janssen and A. Jarmusch and Lingjing Jiang and Benjamin D. Kaehler and K. Kang and K. Kang and Christopher R. Keefe and P. Keim and S. Kelley and D. Knights and I. Koester and I. Koester and T. Kosciólek and Jorden Kreps and M. Langille and Joslynn S. Lee and R. Ley and R. Ley and Yong-xin Liu and E. Loftfield and C. Lozupone and Massoud Maher and C. Marotz and Bryan D. Martin and Daniel McDonald and L. McIver and L. McIver and A. Melnik and J. Metcalf and S. C. Morgan and James T. Morton and Ahmad Turan Naimey and Jose A Navas-Molina and Jose A Navas-Molina and Louis-Félix Nothias and Stephanie B. Orchanian and Talima R. Pearson and Samuel L. Peoples and Samuel L. Peoples and D. Petráš and M. Preuss and Elmar Pruesse and Lasse Buur Rasmussen and A. Rivers and Ii Michael S Robeson and P. Rosenthal and N. Segata and Michael Shaffer and A. Shiffer and R. Sinha and Se Jin Song and J. Spear and Austin D. Swafford and Luke R. Thompson and Luke R. Thompson and P. Torres and Pauline Trinh and A. Tripathi and A. Tripathi and P. Turnbaugh and Sabah Ul-Hasan and J. J. Hooft and Fernando Vargas and Y. Vázquez-Baeza and E. Vogtmann and Max von Hippel and William Walters and Yunhu Wan and Mingxun Wang and Jonathan Warren and Kyle C. Weber and Kyle C. Weber and Chase Williamson and A. Willis and Z. Xu and Jesse R. Zaneveld and Yilong Zhang and R. Knight and J. Caporaso}, title = {QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science}, year = {2018}, journal = {Semantic Scholar}, doi = {10.7287/PEERJ.PREPRINTS.27295V1}, url = {https://www.semanticscholar.org/paper/1ba044d3d501dddd94b479aa9dbe55a93bfa9d5f}, }

Akses Cepat

Lihat di Sumber doi.org/10.7287/PEERJ.PREPRINTS.27295V1

Informasi Jurnal

Tahun Terbit: 2018
Bahasa: en
Total Sitasi: 1173×
Sumber Database: Semantic Scholar
DOI: 10.7287/PEERJ.PREPRINTS.27295V1
Akses: Open Access ✓