Functional Screening of Native <i>Metschnikowia pulcherrima</i> Strains for Wine Fermentation and Biocontrol of <i>Botrytis cinerea</i> in a Sustainable Production Framework

<i>Metschnikowia pulcherrima</i> is increasingly valued in sustainable vitiviniculture for its dual role as a biocontrol agent and as a contributor to wine quality. However, a coordinated dual-purpose selection strategy has not yet been systematically implemented for this species. This study aimed to identify native strains with combined wine-related traits and biocontrol potential by screening a collection of 179 isolates for key phenotypic traits—β-glucosidase and β-lyase activities, hydrogen sulfide (H₂S) production, and pulcherrimin biosynthesis—and assessing their genotypic diversity. Dereplication yielded 106 unique strains, from which five with the most favorable wine-related traits and distinct genotypic profiles were selected for subsequent evaluation of antagonistic potential. Safety-related traits, including growth at 37 °C, invasive growth, pseudohyphal formation, and proteolytic activity, were assessed to exclude virulence-associated behaviors. Antagonistic activity against <i>Botrytis cinerea</i> was evaluated through in vitro dual-culture assays and in vivo grape-berry inoculations, revealing strain- and pathogen-dependent inhibition, with volatile-mediated effects generally exceeding direct-contact interactions. Among the tested strains, NLSFS4 showed strong and consistent biocontrol potential. Microvinification trials further confirmed its oenological relevance, demonstrating the ability to modulate wine aroma composition while preserving fermentation performance. Overall, this study highlights the substantial functional diversity within <i>M. pulcherrima</i> and identifies a promising native strain for integrated use in wine fermentation and biological control in sustainable production systems.