DOAJ Open Access 2025

SurvSig: Harnessing gene expression signatures to uncover heterogeneity in lung neuroendocrine neoplasms

Kolos Nemes Gabriella Mihalekné Fűr Alexandra Benő Christopher W. Schultz Petronella Topolcsányi +8 lainnya

Abstrak

The advances in the field of cancer genomics have enabled researchers and clinicians to identify altered pathways and regulatory networks that differentiate subtypes manifesting as differential phenotypes of lung neuroendocrine neoplasms (NENs). The clinical heterogeneity observed among lung NEN subtypes reflects underlying biological distinctions, including differential mutation patterns, epigenetic changes and immune microenvironment activities. Although in many cases only a handful of underlying genes are used to differentiate patients, broader gene signatures might result in finer separation and help identify patients with differential survival. Lung NENs are vastly underrepresented in pan-cancer studies, resulting in lacking options to explore datasets. To this end, we developed a freely available website (https://survsig.hcemm.eu/) which allows users to upload potential genes of interest, perform patient clustering, compare survival and explore gene expression signature of lung NENs. Leveraging these biological differences enhances the accuracy of gene expression-based prognostic classifiers like SurvSig.

Topik & Kata Kunci

Penulis (13)

K

Kolos Nemes

G

Gabriella Mihalekné Fűr

A

Alexandra Benő

C

Christopher W. Schultz

P

Petronella Topolcsányi

É

Éva Magó

P

Parth Desai

N

Nobuyuki Takahashi

M

Mirit I. Aladjem

W

William Reinhold

Y

Yves Pommier

A

Anish Thomas

L

Lorinc S. Pongor

Format Sitasi

Nemes, K., Fűr, G.M., Benő, A., Schultz, C.W., Topolcsányi, P., Magó, É. et al. (2025). SurvSig: Harnessing gene expression signatures to uncover heterogeneity in lung neuroendocrine neoplasms. https://doi.org/10.1016/j.csbj.2025.06.010

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Informasi Jurnal
Tahun Terbit
2025
Sumber Database
DOAJ
DOI
10.1016/j.csbj.2025.06.010
Akses
Open Access ✓