arXiv Open Access 2024

Thought Graph: Generating Thought Process for Biological Reasoning

Chi-Yang Hsu Kyle Cox Jiawei Xu Zhen Tan Tianhua Zhai +5 lainnya

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Abstrak

We present the Thought Graph as a novel framework to support complex reasoning and use gene set analysis as an example to uncover semantic relationships between biological processes. Our framework stands out for its ability to provide a deeper understanding of gene sets, significantly surpassing GSEA by 40.28% and LLM baselines by 5.38% based on cosine similarity to human annotations. Our analysis further provides insights into future directions of biological processes naming, and implications for bioinformatics and precision medicine.

Topik & Kata Kunci

cs.CL

Penulis (10)

Chi-Yang Hsu

Kyle Cox

Jiawei Xu

Zhen Tan

Tianhua Zhai

Mengzhou Hu

Dexter Pratt

Tianlong Chen

Ziniu Hu

Ying Ding

Format Sitasi

APA MLA BibTeX

Hsu, C., Cox, K., Xu, J., Tan, Z., Zhai, T., Hu, M. et al. (2024). Thought Graph: Generating Thought Process for Biological Reasoning. https://arxiv.org/abs/2403.07144

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Informasi Jurnal

Tahun Terbit: 2024
Bahasa: en
Sumber Database: arXiv
Akses: Open Access ✓