arXiv Open Access 2017

A Resistive CAM Processing-in-Storage Architecture for DNA Sequence Alignment

Roman Kaplan Leonid Yavits Ran Ginosar Uri Weiser

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Abstrak

A novel processing-in-storage (PRinS) architecture based on Resistive CAM (ReCAM) is described and proposed for Smith-Waterman (S-W) sequence alignment. The ReCAM massively-parallel compare operation finds matching base-pairs in a fixed number of cycles, regardless of sequence length. The ReCAM PRinS S-W algorithm is simulated and compared to FPGA, Xeon Phi and GPU-based implementations, showing at least 4.7x higher throughput and at least 15x lower power dissipation.

Topik & Kata Kunci

cs.ET

Penulis (4)

Roman Kaplan

Leonid Yavits

Ran Ginosar

Uri Weiser

Format Sitasi

APA MLA BibTeX

Kaplan, R., Yavits, L., Ginosar, R., Weiser, U. (2017). A Resistive CAM Processing-in-Storage Architecture for DNA Sequence Alignment. https://arxiv.org/abs/1701.04723

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Informasi Jurnal

Tahun Terbit: 2017
Bahasa: en
Sumber Database: arXiv
Akses: Open Access ✓