arXiv Open Access 2014

Cell development obeys maximum Fisher information

B. R. Frieden R. A. Gatenby
Lihat Sumber

Abstrak

Eukaryotic cell development has been optimized by natural selection to obey maximal intracellular flux of messenger proteins. This, in turn, implies maximum Fisher information on angular position about a target nuclear pore complex (NPR). The cell is simply modeled as spherical, with cell membrane (CM) diameter 10 micron and concentric nuclear membrane (NM) diameter 6 micron. The NM contains about 3000 nuclear pore complexes (NPCs). Development requires messenger ligands to travel from the CM-NPC-DNA target binding sites. Ligands acquire negative charge by phosphorylation, passing through the cytoplasm over Newtonian trajectories toward positively charged NPCs (utilizing positive nuclear localization sequences). The CM-NPC channel obeys maximized mean protein flux F and Fisher information I at the NPC, with first-order delta I = 0 and approximate 2nd-order delta I = 0 stability to environmental perturbations. Many of its predictions are confirmed, including the dominance of protein pathways of from 1-4 proteins, a 4nm size for the EGFR protein and the approximate flux value F =10^16 proteins/m2-s. After entering the nucleus, each protein ultimately delivers its ligand information to a DNA target site with maximum probability, i.e. maximum Kullback-Liebler entropy HKL. In a smoothness limit HKL approaches IDNA/2, so that the total CM-NPC-DNA channel obeys maximum Fisher I. Thus maximum information approaches non-equilibrium, one condition for life.

Topik & Kata Kunci

Penulis (2)

B

B. R. Frieden

R

R. A. Gatenby

Format Sitasi

Frieden, B.R., Gatenby, R.A. (2014). Cell development obeys maximum Fisher information. https://arxiv.org/abs/1404.7529

Akses Cepat

Lihat di Sumber
Informasi Jurnal
Tahun Terbit
2014
Bahasa
en
Sumber Database
arXiv
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Open Access ✓