arXiv Open Access 2012

Kinetic vs. energetic discrimination in biological copying

Pablo Sartori Simone Pigolotti
Lihat Sumber

Abstrak

We study stochastic copying schemes in which discrimination between a right and a wrong match is achieved via different kinetic barriers or different binding energies of the two matches. We demonstrate that, in single-step reactions, the two discrimination mechanisms are strictly alternative and can not be mixed to further reduce the error fraction. Close to the lowest error limit, kinetic discrimination results in a diverging copying velocity and dissipation per copied bit. On the opposite, energetic discrimination reaches its lowest error limit in an adiabatic regime where dissipation and velocity vanish. By analyzing experimentally measured kinetic rates of two DNA polymerases, T7 and Polγ, we argue that one of them operates in the kinetic and the other in the energetic regime. Finally, we show how the two mechanisms can be combined in copying schemes implementing error correction through a proofreading pathway

Penulis (2)

P

Pablo Sartori

S

Simone Pigolotti

Format Sitasi

Sartori, P., Pigolotti, S. (2012). Kinetic vs. energetic discrimination in biological copying. https://arxiv.org/abs/1209.4566

Akses Cepat

Lihat di Sumber
Informasi Jurnal
Tahun Terbit
2012
Bahasa
en
Sumber Database
arXiv
Akses
Open Access ✓